Ucar038400.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- ZFX
- Assembly
- GCA_960531455.1
- Location
- OY482674.1:118971301-118975238[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.7 2.2e+02 3.9 2.6 3 23 330 352 328 352 0.93 2 10 0.006 0.79 11.6 2.3 3 23 582 603 580 603 0.91 3 10 0.00037 0.049 15.4 1.6 1 23 620 643 620 643 0.96 4 10 0.0049 0.65 11.9 0.4 1 23 648 672 648 672 0.93 5 10 0.012 1.6 10.7 0.6 2 23 773 795 772 795 0.94 6 10 0.25 33 6.5 0.0 1 21 800 820 800 821 0.92 7 10 4.7 6.2e+02 2.5 0.1 2 23 849 870 848 870 0.89 8 10 4.7 6.2e+02 2.5 3.2 3 16 883 895 881 902 0.74 9 10 6.8e-06 0.0009 20.9 2.0 1 23 908 931 908 931 0.97 10 10 0.027 3.5 9.6 0.3 1 14 969 982 969 985 0.92
Sequence Information
- Coding Sequence
- ATGATCGACGCCGATTTAGACGATCGTCATCTCTGCATCAAATGTAATGCCACCATTTTAGGCTTAGAGGCTTACATCGAGCATCGCAAAACTCCCTGCACAAACCTCAATAGCACCGCTGTACGGAGCAGCAAAACCGATCAAGTCTCACCAAATGCCATCACGCACACGGACATCATAACCACACCACGCGCCAACCATCTCGAGCACACCTATGACGCTTTCGTAGAATTTGCCGAACCTGAGACATATGTCAAAGAGCCGCCAACGCATGGCGGTAAGAGCGCCAAATCTTTATCGGATTGCTATGATCTACCCTATGAGTTGGATGCGGATGTGTTCTTTTCATCATTGCAACTACAGAGTGTACAGGCGGCGACGCCTTCGACGAGTGGCAAACAAGGACCAACAATGACGACGAGCCTAACACAGCAGCAGCGACAGGTTAAAGTGGCACATAATGAACCGTGGATGTCCGATGCACATGGCGGTGGCACGAGCAGCGCTCATCAACCGAAGTCCTATGAAGATTTCGAACACGAATCGCCAGAGGCCAGCGAAGACGAAGACGAGGAAGATAATGATGTGGATATAGATGACGACGACGACGAAGATTACGATCCGATAGCAGATGCGCATGCGTCGGGCGGCAAGTGGAAGCCGCCAACGATGCGACACTCACCACCCGTAGTGCCAGAAACGCATACCGGCGGCAAGTGGCGTCCAGAAAATCGACCAACTTTAAATGTTGCACACACACAACTGCTCACACGTCTCTCGCCGAATTGGGCGGAGGCAGACGAAGCGGCGGCTTACAATGAGTTAGCGGAAGGAGCGGAGGGTGCAGAGGTAACAGAGGCGGGCGAAGAACAACATCCACCAGCCGAACACACCAAAGGCAAATGGATACCCGGCACAAAGATGCAACGACTCGAATACAAAGAGGATGTGCTGGAGCTCGCCAAAACGGCGAATCAAGGTTACTGGTGTAACATTTGCTGCCGTCAGCTCAAGAGTAAAACAAATTATGAGAATCATTTGAAGACTGGTTATCATTTGAAACGCGCCGAACCGGAGCGCCAGCTAGAGAAAGCAGCGCTGGATGATTTTCAACGCGGCGAATTGATGAAAAGTTTCTTGTTTGAAGAGTTTGAGTTGATGGAACGCCCGAAGCCGCAAGTAGTGGTTGAGGCGGTAGAGAAAACGACGATGACGACTACAACTACGACTATGCCGAGTGGCGCGGTTGAGACGTCGCTGAGTGTGGCAGATGTCGCCATGGAGGTTGACCCAAGTGTTGCTAGTCCCACCAAAAAACGTCATCGTCGCGCTGCCTACATCAAATGTGAACTCTGCAAGCACAGCATGTTGCGCCATCTGGTGGGCAAGCACTTAATCTCTCATTACCACTATCGCCGCATGCAAGCCGATCCCGCCAAATCGCTGCACATGATTCTCGAGAATATACATTCGGTGGTGCTGCAGTCACCTTTTCAATGTCGTCTTTGTTGCTTCTACTCGAACACCGAGGAAATGTTCTTGCAACACTGGAGTTCCGCGGAGCATTTGAACACAATTGAGCGACTTGGGGAACTCGTTCAGCTATGGTGCAGCTACTGCCGTTTCGAATGCGAGCATAACCAACAAATGGCAGATCATCTGCTAAGCATTGAACACAAAGAGGTCATATGGGCTATCAATCGTTCTGTGCCGATTTGTATAAGCAAGAAGCCAAACTTGGATTGTATTCACTGTGGACAGAATTTTCGTTACAATGCCGAATTACGTCAGCACATGCTGCTGTGTCATTCCGAACAAGAATTGATAGGGACCATATCGGATAACTATCAGTGCCGTTTCAAGTGTGAACTGTGTCCGGAGGTGTGTCGCTCGAAGGTTACCTTGCAGCGTCATGAGAAGAATGAGCACAAAGTGAGCAAGTACTTTTGTTCGATATGTAATCTGGAGTTTGATACGCCTGGCAAGGCGCGTCGGCATCGTAAGACGGCTGAGCATCGGAAACACGCTAGCACGAAGTTGGAAAAAGGCCGCGAGGCTAATGTGAAAAACAGTAGAAAAAAGCGGATGACGTTGGAGCGGAAGCAGTTCAAGGGTGAGAAGAGCTACGACGAACACGAGTTCATGGCCTCATCCGACGTGGAAGCCATTCTAAATGAATTGACACAACCAGACACAGAGAGTTTAGGTGAAATAATGAAGGTGGAGGAAATCGCCACCAATACTACCGAGTACAGCAAACCCAGCGCAAAATCCCCAGCACAAAGATCTCAGCAGAAAAATGAGCAAAAGGTAATCAAGTGTAGAGACTGCGAGGAAATCTTTGCGAGCAAGACAGCTCTAAGCGAGCATCGTGACATCTGTCATCCGTTGTTGCGTCATGTCTGCCTAAGTTGTGGTGAGAGTTTCGCTTTGGCTCAAGCGCTAGGACGTCATGCGCGTCTATGTGAGCCTAAGCCTAGTACTTCCAAGGAGGCAATGCTGCTTGAAGTAGAAGCAAACGTTGTACGAGGTGCCAATAAGTGGAGCTGTGAAGAGTGCGATTTTAGCGCCCCCTATGAATCAGAGTTAATCTTCCATCGCTTGTATCACTTGTACGGTCCGATGTCGAAAAATCAAATTATCGCTTGTCCGATTTGCTCCAAGGATTTTCGTAAACTTTCGCTGCGTTGCCATTTGCGTTgccatacaaatgagaaaatATTCGCTTGTGAATATTGTGATATGAAATTCGCGCGTCGTCACAATCTCAAAGATCACATAAAGCGTATACATGAAGTGGCATTGTTGCTACCAGATGATTTAGAGGAGTTCAGCGTCTATGATGCAGAGACTACCGAAAAGGTAAAGCGGAAGCGAAAAATGGACGATGCTGATGCTGATGGCTACACTTGTGACGTTTGCTCGAAAACATTTGTCTCACAATCTCTAAATGAGATGGCTGAACAATTTGTCATTTACCTTGAATGGGTGCCTGGACACTGTAACATGCCGGGAAACGCGATGGCAGACAAACTTGCTAGAGAGGGCACATGCGCTTCACTTTCAATGTCGCTCACACTGAAGGAGTTGTACTTCAAAGAAGCAAATAACAGTTGGCATGGTCTGAGTACTTGCATCCATACTAGGCCCTTGTGGCCTAACTGGAACGCCAGACCAACAAAGAGACTACTCGCACTCGGAAGGTCCGACCCTGATCTAATGACAGGACTATTAAAAGGCCATATAGTCCTTGGAAAGCATGCAGAAAGGATGAATGCTCCATATTACGATTACTCTAGGGATTGTGAGGACAAAGAAGAGGCCGAAGCACTTGCTGCGCGATTGCGCTTAGTACAAGTAAGGAGGCGACTGAAGCGTTTACAAGATCTAGGGGATCTAGCTACAATGGAATttagaaaaattataaaattcgTGGAATCCTGA
- Protein Sequence
- MIDADLDDRHLCIKCNATILGLEAYIEHRKTPCTNLNSTAVRSSKTDQVSPNAITHTDIITTPRANHLEHTYDAFVEFAEPETYVKEPPTHGGKSAKSLSDCYDLPYELDADVFFSSLQLQSVQAATPSTSGKQGPTMTTSLTQQQRQVKVAHNEPWMSDAHGGGTSSAHQPKSYEDFEHESPEASEDEDEEDNDVDIDDDDDEDYDPIADAHASGGKWKPPTMRHSPPVVPETHTGGKWRPENRPTLNVAHTQLLTRLSPNWAEADEAAAYNELAEGAEGAEVTEAGEEQHPPAEHTKGKWIPGTKMQRLEYKEDVLELAKTANQGYWCNICCRQLKSKTNYENHLKTGYHLKRAEPERQLEKAALDDFQRGELMKSFLFEEFELMERPKPQVVVEAVEKTTMTTTTTTMPSGAVETSLSVADVAMEVDPSVASPTKKRHRRAAYIKCELCKHSMLRHLVGKHLISHYHYRRMQADPAKSLHMILENIHSVVLQSPFQCRLCCFYSNTEEMFLQHWSSAEHLNTIERLGELVQLWCSYCRFECEHNQQMADHLLSIEHKEVIWAINRSVPICISKKPNLDCIHCGQNFRYNAELRQHMLLCHSEQELIGTISDNYQCRFKCELCPEVCRSKVTLQRHEKNEHKVSKYFCSICNLEFDTPGKARRHRKTAEHRKHASTKLEKGREANVKNSRKKRMTLERKQFKGEKSYDEHEFMASSDVEAILNELTQPDTESLGEIMKVEEIATNTTEYSKPSAKSPAQRSQQKNEQKVIKCRDCEEIFASKTALSEHRDICHPLLRHVCLSCGESFALAQALGRHARLCEPKPSTSKEAMLLEVEANVVRGANKWSCEECDFSAPYESELIFHRLYHLYGPMSKNQIIACPICSKDFRKLSLRCHLRCHTNEKIFACEYCDMKFARRHNLKDHIKRIHEVALLLPDDLEEFSVYDAETTEKVKRKRKMDDADADGYTCDVCSKTFVSQSLNEMAEQFVIYLEWVPGHCNMPGNAMADKLAREGTCASLSMSLTLKELYFKEANNSWHGLSTCIHTRPLWPNWNARPTKRLLALGRSDPDLMTGLLKGHIVLGKHAERMNAPYYDYSRDCEDKEEAEALAARLRLVQVRRRLKRLQDLGDLATMEFRKIIKFVES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -