Basic Information

Insect: Urophora cardui
Gene Symbol: PRDM13
Assembly: GCA_960531455.1
Location: OY482673.1:22554457-22556472[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0011 0.15 13.9 0.4 1 20 270 289 270 291 0.95

2 4 8.9e-06 0.0012 20.5 1.4 3 23 502 522 500 522 0.93

3 4 3.4e-05 0.0045 18.7 0.5 2 23 529 550 528 550 0.97

4 4 1.3e-05 0.0018 20.0 0.9 1 23 565 588 565 588 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0011	0.15	13.9	0.4	1	20	270	289	270	291	0.95
2	4	8.9e-06	0.0012	20.5	1.4	3	23	502	522	500	522	0.93
3	4	3.4e-05	0.0045	18.7	0.5	2	23	529	550	528	550	0.97
4	4	1.3e-05	0.0018	20.0	0.9	1	23	565	588	565	588	0.97

Sequence Information

Coding Sequence: ATGTTTCCAGCACTAACAAACAGCGCGACTAATCAACAACGCCAACAACATCTAACACTGCATCACTCACAGCGTGAGCAACAACTGCGagaactgcaacaacaacagcagcaactgCTACTTCAACATACTCCACAATATTACCAGCACCAACAAACACAACAACAGGAACTACAACAGCTGcagctgcaacaacaacaacgctcCAATAAACGCAGTGCCAGCATGATATTTCGTATAGAACATTTATTACCGAGCACCAGTCGTGGCGGCCCACCGCCACCAACCACGATTGCATCACCAACAACTCCATCAACAACAACTACACCAACACCAACTACACCGACAGCAACAACACTTTCACTCTGTTTGCCTGCAATTGCTGCCAGCATCTCTACCTCACCAACTCACCCAACAACACCGAAACGTCCAAGGTTGCGTGCACCATTTAACGGTGTTTTAATGTCACAACTCACACCCAAAGACACCGTTTCAGAGGCGATACCATCTCATGCCTTAATGAGCGTGAATAACAGTACGTTAGCGGAGCAACAACAGCCGGCATATTGTACACTGGATCAGGGCGTATTGCGCATGAGTTCGGAACTTTTGCGACGCATTAAACTCTCCGAAGATATTCACAGTTATAATGCGTTGTTCGAGCTGCAACCGGGCGGATTGGTGCATGTGCGGACGGTACGTGATGTGGCACGTGATGAGGAGCTGGTTGCTTGGTTTGGTGAGGATGTCGCGCTATTGATGTCAATACCATTTCTGACGCCTTTAAATATACAAGGTAATAAACGTTACACTTGTCACCTCTGCCATCTCACCTTCGAAACGCCAAATCCACTGAAAATTCATTTAGCGCTCGGTTGCGGCCGTCAATCAATGGACTTGCTCTGGATACGTTTACACTATGCTTTGAAAGCCTCCAGCTATGCGCAAGAACATCGCCAATTAATCGCGGCAACGGCCACAGCGGCAGGCTCGCCAACCACGCCATCGCTAACAATACAACATTCACCAGCCACAGCGCCATCTAGCGCATCATCGATTTCACCAACCTCATCGCCACAACCGGCTGCCTTGGCGCAACGAACGCCAGAGCGAGAGCAGGAGCAACAGCAGCAGCCACAACTACAACTCCAACAACTTCCTCCACAAACTCACAGTCAATCGCTGCTTCTGCACTCAGCGCAACGTTTCTCCGCCTTCAAGCCTGTCACCTCTTCCATCGGCGCTTTCACTTCGGCCATCACAACGACCAGTTCGTCGTTCAGCATACCAAATGCTCACAGCAGCTCCTCTATTGGTGTTGCTGCGCCAAGCTCCACCGTATTTTCATATTTACCGCCTATTGGAACGGCATCTGTTCGTCCCATCTCTCATCACATGCATCTGCTACAAACGCCTGGTGCCTTGACCTCAAATCCACTGAATGCTGCCGCTCAAATTGAGGCGATCGTCAGTAGTATGGGCGCCTCGAAGCAAGGACATCTCTGCATCTACTGCGGCAAGGTTTACTCGCGGAAATATGGACTTAAAATTCATATACGCACACACACCGGCTTCAAACCGCTGAAATGTAAATTTTGCCTGCGTCCCTTTGGAGATCCCAGCAATCTCAATAAACATGTACGCCTGCATATACAAACGAATGCGAATAATAGTAGTACGCCCGTCGAAGGCTACCAGTGTACGCTGTGCAATAAGATATTGGCGCGGCGGCGTGATCTACAGCGACACATGGAGTCGCGGCATTCGGGAGAGGGTGATGGTGATGGTGGCAGCTCATGA
Protein Sequence: MFPALTNSATNQQRQQHLTLHHSQREQQLRELQQQQQQLLLQHTPQYYQHQQTQQQELQQLQLQQQQRSNKRSASMIFRIEHLLPSTSRGGPPPPTTIASPTTPSTTTTPTPTTPTATTLSLCLPAIAASISTSPTHPTTPKRPRLRAPFNGVLMSQLTPKDTVSEAIPSHALMSVNNSTLAEQQQPAYCTLDQGVLRMSSELLRRIKLSEDIHSYNALFELQPGGLVHVRTVRDVARDEELVAWFGEDVALLMSIPFLTPLNIQGNKRYTCHLCHLTFETPNPLKIHLALGCGRQSMDLLWIRLHYALKASSYAQEHRQLIAATATAAGSPTTPSLTIQHSPATAPSSASSISPTSSPQPAALAQRTPEREQEQQQQPQLQLQQLPPQTHSQSLLLHSAQRFSAFKPVTSSIGAFTSAITTTSSSFSIPNAHSSSSIGVAAPSSTVFSYLPPIGTASVRPISHHMHLLQTPGALTSNPLNAAAQIEAIVSSMGASKQGHLCIYCGKVYSRKYGLKIHIRTHTGFKPLKCKFCLRPFGDPSNLNKHVRLHIQTNANNSSTPVEGYQCTLCNKILARRRDLQRHMESRHSGEGDGDGGSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -