Ucar028134.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482673.1:64124511-64132699[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.042 5.6 8.9 0.1 2 23 311 333 310 333 0.95 2 8 0.0052 0.69 11.8 0.6 3 20 1301 1318 1300 1322 0.93 3 8 1.2e-05 0.0016 20.1 2.7 1 23 1358 1380 1358 1380 0.98 4 8 0.00091 0.12 14.2 3.7 1 21 1461 1481 1461 1482 0.95 5 8 2.5e-05 0.0034 19.1 0.4 2 23 1489 1510 1488 1510 0.97 6 8 0.00048 0.063 15.1 2.8 1 23 1516 1538 1516 1538 0.99 7 8 0.073 9.7 8.2 1.1 1 23 1548 1571 1548 1571 0.95 8 8 0.1 14 7.7 0.7 1 23 1580 1602 1580 1602 0.96
Sequence Information
- Coding Sequence
- ATGAACGATGGACTCATTCCTAGCTATGAGAGCTACTTCGGCGGTTCTTGTTTGCTACCAGATTTGGCAGCAGATTTGGCTGTGACAACAACGATGCATTCAGCGCTGGATTCTTCAGATTATCAACAAAAAGAAGTCGCTGGAACACCATACcaacaaatacaacaacaaaatgcatCACGTCGTTTTCCTCATCATCCTTCAACCTTTAGTCATCAACCATACGGTGTTCCTGGTGATGCTACCGCACAAATCCTAAATAATGGCACACAAATAAATTGCATATCCAGTGACAACCGCAATAATCACAACAATAATAATGTGAATATTGTTATGTCGACTTGTGGTCCAAGTAGCATTGTTCCAGTAACACCGACTGCTGCGTTCACTCAAATTCCTTTTGTACAAATACATACGACAGATGTTCAGCCGAGAAGCGCATTTAACAGCTCACGCTATAGACGCACAACTACAGCCGCAGGCATCAGTAGCCATGAGAAGATGATAAAAGCAGAACCAATTAAATCGGAAAATGCCGAAGGTGCTAAAGATCGCATAAATGCGACTCCCACGCCACCCACAGCGGCAGCACTGCAACCACAGCAGCAACACCTTGGCAATATTCAAAGTCATCCTTCATCCACACAAGGCACCAGCTCTTCTCTTCAAAAtggaaaaaatatgaaatttccAAGCGAAACCGTAAATTTGTATTTGGGCTTAGATCCCCCGAACATCGATTGCGTAACGAATACGGTGGGCAGTGAGATTTCAGCGACGTCTGCGCCAGAAGACGATTTGTTAACATTTccaaaaatttataaatgtcAATGCTGCCCTTTTATCAGCTTAAGTGAAAGCGGTTTGCAACGGCATTTTAATACGTCGCATGGAAACTTATCTGAAAATTCGCTTAGCCGCATCACAATTTCATGTCCAGgCTGCGAGAACAAGTTTTACGCATTGACATCACTTGAAGCACATCTACGACAAGATCACCTAATGACCGAAGAGGATGTGGTTGAACTGATTCATGCCATCAAAAAGAAGTTTAAAATCTCTCAGAACTCCACCCCACTAGCCACCAACAACGTCAAATGTGCAGATCAAATAGAATCCAACGATGCACCGATGAATGGAACACAACGCCGAAGTAGAAtctatttaaaaaatgttgaaTGTTTGCGTGAACCAAATAGAGATCCTATCGAACAGCAAGATAATCTTATTACCGAGAGCCTTTTTCATTTCGATAATGACGATGATTGCAATACGTTAGTAAACATCGGTAGCATTAGTATGGAGGATCACGATATAATTGGTATGCTAACAAGTGAGGAAACAATATACCACAACaatggcaacaacaacagcagcaacgaTTACCTAAACAAAATTGACAATAATATTGTTAATGAGTCCGTAACACCACCTAACTTAGAATCAAATAAGACTAACACGAATCCGCAGCCAAAACAAAAGATATCAATAAAAAGTGTTGATGTACTTTGTGAACCGGCGCTTGTGCGCCGTGATTATGAGATGCAAACAACATTTGGAGactttatgaatatttcacacGATTTAAATTTGCATGCCAACAGTGACAACAATAGCAATAGTCATAGCGAAAACAACATAAACAACGATGGTACGGAAATCGTCAATGCTGATGATGGTGAACAACGCAACTATACGGTGACTGCCAATAGAGAGCTTTTAGTAAATAGTCAAAGCAACGTGGGCACTGCAGAATTTACACAAGATTATGAAAAGCCGAGAAAACCGAAAATTTATATCAAAAATGTCGATATTCTTAAGGAGCCAATGACATTCACAAGCGCTTACAATAGCACCCCCAACACACTCACATCCGAATCCTCCAGCAACGTAatgaatttcaattttatgcCCCAACGAGGCAACAACTGTTACTTGGAAACAGTGGAAAGTGTGCATACAACAGTGCCGACATTTAATGGTGGTGTTGGTGGTCTACCACTTGGCACCATATCGGATCAATATCTTTTTGATAGTGGCGCTAGCAGCTATCTGATTAGTTCAACTGCGCCGAGCACGGAAAACTATGTTTATGGCAATGAAACTCATGCGGAAAACCTCCTAATAGATACCACTCGTTTTACGGATATGATAACACCAATTACAACAGAATCTACTCCACCAATTTCAACGCAAACTTCATCATCTTCACCATCATTATCATCAACAACAATCGAAAATGTTATTGAGAGTACAAACAGAAATGGCGATGTCCCATATCCTCAAAGGCCATCCGCACATGCTACCTCCAACTCCataccgctgaatgcacaaaaacagaaaattttcattaaaaatgtgGACATACTTAAGGAGCCTCAATTCCAGGAGCCGCGTGGCTTGCTTCATCTACGCACCGTCGACGAGTTGAATTTGATGAATAAAAAGGAAGTTGAAAACTTAATAGCACCAAATTTGGAGGGTCACCAAGCCAATGATACTACCATAAAGGAGAACATTAGTGAAAATTGTCAGCCAGAATTGAATACAGCAAATGGCGGCAGCGGCGGCGGCGGTGAATCGTTATCGGCTAATGACTATTGTAACGATCGCAACGATGTAATCGAACAGATATCGTCGTAtgaatgtgaaaatttcaaaataaacgaaTTCAACACATCGAATGAGTGGCAAGACGATTATGATCTTGGAGAAGATATAAGAGATATTATAACCAGCACCATGGCGTCCAGCAGTTTACAGTCGTCAGCAACAGCAGCACAGAAATTCATTCACGATTTAGATACACCACAAATGTCATTGATATCTATACCAGATCTAGAAATAGAAGAACTGGCCGGCGGCGGAAAGGGTGCGCAGCATAATGTTGTTAACTCAGACATCGGCGGCACAGACACTACGGAAGTTGTGACGAATGCCATCGAAGATAATAATACCCATTTCATATTCGATTGTGAAAATACCATAATGGAAAATGATACGCAAGAAACTCCTCTTACTGGCAATGTGGATAATACGATAAACAACAACCACACTAATCGGATTTCAAACACCTCCGGCCAAACTGACAATGCTGATAAGTCCGGAACTACAGCGCAATCGCCCAGCTCATCTGAGGAAGTGCTAAAACATGAAAGTTTGAATCGAGAGACACCTTGTTCGGAGCAAATCGAGACAGTGACACCATCACAAAAAATGAACAGttccaattttgataatattccGCCATTAACACCAATGACACCAACATCTGCATACACAATTAGCACAACGGATGTTGTGGCGCCTATTGCTGCGACACCCGTTTGCGGCTTGCCAGTGCCGCCGCTTGTGCCCATGTTACCATCCGTGCAGCTCTTAAAAACCGTTACGATCACACAGAATGCCTCTGCTGTATCAACGGCGGTTACAACAATAACGGGATCAACGACAACGGCAACGCCAACGGCGACAACGGCGCCAGCGCCGACGACGACGGCTCCTGCCGAACGTGGCCGTATTTATGTGTCCAACAATTTACTGCAGACTCCAAGCGCCAGCAGCCGCGTCGCCATGCAACCTTCGTCTGCGGCTCCCTTGAGCAATGAAGTTAAACATAAAACAACGAGGAAAGCAAGTAAAACCAAAAAGGAGCAAATGAAAACAGTAACACCCATTGCTGTTACGGTTATGGGTGGTACATCGGTGCGTGGTCGGCCATTTGGCGCCAACCGCACGGGCATCTCCAAACAGCGCAAAGAATTGTGGGAGAGCGAAGCGGGTGGCGGCGTTTATTTAAAGTGTACCGTTGCTggttgtgcttttcgttttaagAAGTCCACAACGATAGAATATCACATCAAATGTCACagcagTGATTCCTCGCCACATTCGGTGGCATGTCCCGAATGCAAAATGCCCTTTACAAATTGGAATTCATTGCATACACACCTGTGGCGCTCGCATCAAATCGATATGGAGCTATATAGTTGTCAGTTATGCAATTTCAAAACGCCCATCTACTCGCGCCTCTTGAATACACATTCGAAAATTCATTATGATGAGCGCAACTATAAATGTGATCAGTGTGAGAAAGCATTCAAAAACACgaaacaattaaaaaatcatCGACGCTGGCATCGCAATCATAACAAAGCGAAGAAAACCATGTGGGAAAGTTCCAAAGAATACGAATCTAACTATGACAACAAAACTGACGACACAGCGGCGATGGTGGTTGCTGAGAAAGCAAAGGAGCATAATAATGTAGAACAAATAAAGGTGTCATCATCGAATATGCCGAATACCACAGTCAGTAGCGCCACCATTGCTAGCACTGCGCCCACAACTACCTCCTTACCAAAGACCGCACGCAATTTTTATCGCTGCAAGAATTGTGATGCAGTTTTCTCCCACCAGAAAACGTTGCGTGAGCACTTGTGCAAGAATGCCGCCGCAGCGGTGCAATGTGAGGTGTGCGATCGTGTGCTAACATCGCGCTCCTCCCTCAAGCTGCACATGCAGTCGCATGAGCCATCGCGCCGCTTCAAATGCAACATCTGTGATTATGCCAGCAGTGATCATAATGCATTCCGGCGTCATAGAATGACACACGAAAGCAGCAATGGCAAAGCAAAAATGTACGCCTGCGCACACTGTGACTACAAGTCAATACAAAGTGTGGCATACCAGAAACATGTACAACAAAAACATCCGCAATTAGCAGACTCCATCGTATACAAATGCAAAATCTGCTCGTACGCAACTATAAACAAGACCTTATACGATGCACATAACATCAAACATGAAAATTTGAACAGCAACAACGAAGGACTAATCACCGACGGTCCTGCATCGTCAATGCCTGCAACAGAAACTGTCGCCAATAGATTAGAAGAAAACAGTTCGaacaataaaagtgtaagtCAGCAGTCTACTGCTGCTGCGGCGCCGGTGGCGGCGTTGtcaaagaataaaataaaagtcaaaagtCATTTATTGTTAACAACGCCTGGCGTCGTCGATGCAATGACTGAATTTAATGATCTATGCATTGACGCATTTACAATACCTGTGTAG
- Protein Sequence
- MNDGLIPSYESYFGGSCLLPDLAADLAVTTTMHSALDSSDYQQKEVAGTPYQQIQQQNASRRFPHHPSTFSHQPYGVPGDATAQILNNGTQINCISSDNRNNHNNNNVNIVMSTCGPSSIVPVTPTAAFTQIPFVQIHTTDVQPRSAFNSSRYRRTTTAAGISSHEKMIKAEPIKSENAEGAKDRINATPTPPTAAALQPQQQHLGNIQSHPSSTQGTSSSLQNGKNMKFPSETVNLYLGLDPPNIDCVTNTVGSEISATSAPEDDLLTFPKIYKCQCCPFISLSESGLQRHFNTSHGNLSENSLSRITISCPGCENKFYALTSLEAHLRQDHLMTEEDVVELIHAIKKKFKISQNSTPLATNNVKCADQIESNDAPMNGTQRRSRIYLKNVECLREPNRDPIEQQDNLITESLFHFDNDDDCNTLVNIGSISMEDHDIIGMLTSEETIYHNNGNNNSSNDYLNKIDNNIVNESVTPPNLESNKTNTNPQPKQKISIKSVDVLCEPALVRRDYEMQTTFGDFMNISHDLNLHANSDNNSNSHSENNINNDGTEIVNADDGEQRNYTVTANRELLVNSQSNVGTAEFTQDYEKPRKPKIYIKNVDILKEPMTFTSAYNSTPNTLTSESSSNVMNFNFMPQRGNNCYLETVESVHTTVPTFNGGVGGLPLGTISDQYLFDSGASSYLISSTAPSTENYVYGNETHAENLLIDTTRFTDMITPITTESTPPISTQTSSSSPSLSSTTIENVIESTNRNGDVPYPQRPSAHATSNSIPLNAQKQKIFIKNVDILKEPQFQEPRGLLHLRTVDELNLMNKKEVENLIAPNLEGHQANDTTIKENISENCQPELNTANGGSGGGGESLSANDYCNDRNDVIEQISSYECENFKINEFNTSNEWQDDYDLGEDIRDIITSTMASSSLQSSATAAQKFIHDLDTPQMSLISIPDLEIEELAGGGKGAQHNVVNSDIGGTDTTEVVTNAIEDNNTHFIFDCENTIMENDTQETPLTGNVDNTINNNHTNRISNTSGQTDNADKSGTTAQSPSSSEEVLKHESLNRETPCSEQIETVTPSQKMNSSNFDNIPPLTPMTPTSAYTISTTDVVAPIAATPVCGLPVPPLVPMLPSVQLLKTVTITQNASAVSTAVTTITGSTTTATPTATTAPAPTTTAPAERGRIYVSNNLLQTPSASSRVAMQPSSAAPLSNEVKHKTTRKASKTKKEQMKTVTPIAVTVMGGTSVRGRPFGANRTGISKQRKELWESEAGGGVYLKCTVAGCAFRFKKSTTIEYHIKCHSSDSSPHSVACPECKMPFTNWNSLHTHLWRSHQIDMELYSCQLCNFKTPIYSRLLNTHSKIHYDERNYKCDQCEKAFKNTKQLKNHRRWHRNHNKAKKTMWESSKEYESNYDNKTDDTAAMVVAEKAKEHNNVEQIKVSSSNMPNTTVSSATIASTAPTTTSLPKTARNFYRCKNCDAVFSHQKTLREHLCKNAAAAVQCEVCDRVLTSRSSLKLHMQSHEPSRRFKCNICDYASSDHNAFRRHRMTHESSNGKAKMYACAHCDYKSIQSVAYQKHVQQKHPQLADSIVYKCKICSYATINKTLYDAHNIKHENLNSNNEGLITDGPASSMPATETVANRLEENSSNNKSVSQQSTAAAAPVAALSKNKIKVKSHLLLTTPGVVDAMTEFNDLCIDAFTIPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -