Basic Information

Insect: Urophora cardui
Gene Symbol: -
Assembly: GCA_960531455.1
Location: OY482672.1:135569192-135573098[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00017 0.023 16.5 3.1 3 23 483 503 481 503 0.96

2 8 0.00022 0.029 16.2 0.5 1 23 509 531 509 531 0.98

3 8 4.7e-05 0.0062 18.2 1.9 1 23 537 559 537 559 0.98

4 8 4.9 6.5e+02 2.5 0.1 13 23 710 721 709 721 0.91

5 8 1.1e-05 0.0015 20.2 4.2 1 23 726 748 726 749 0.95

6 8 0.029 3.8 9.5 2.4 1 23 754 776 754 776 0.97

7 8 1.3e-06 0.00018 23.1 0.5 1 23 782 804 782 804 0.99

8 8 0.00055 0.072 14.9 2.0 1 23 810 834 810 834 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00017	0.023	16.5	3.1	3	23	483	503	481	503	0.96
2	8	0.00022	0.029	16.2	0.5	1	23	509	531	509	531	0.98
3	8	4.7e-05	0.0062	18.2	1.9	1	23	537	559	537	559	0.98
4	8	4.9	6.5e+02	2.5	0.1	13	23	710	721	709	721	0.91
5	8	1.1e-05	0.0015	20.2	4.2	1	23	726	748	726	749	0.95
6	8	0.029	3.8	9.5	2.4	1	23	754	776	754	776	0.97
7	8	1.3e-06	0.00018	23.1	0.5	1	23	782	804	782	804	0.99
8	8	0.00055	0.072	14.9	2.0	1	23	810	834	810	834	0.91

Sequence Information

Coding Sequence: ATGGCAACTAGGAACAGGGCCGAAACAAATGGAGCAGGAATCGAGAAAATTGAAGAAGAATTTAGCTTCAGACGCCTGAATCTGACATCATCATGTCGCATATGTCTACAAAGTGGAAAAGAAGGAGAAGAGATGGCTGCAATTTTTGATCAATATGCGGACGACGTATGCTTATATGAGAAGATTGAGAGCTGCGGAGGCATAAAGATTCTAACAAATCCAGAATTGCCGagaaaaatttgtaaaaaatgCAATGGATATCTTGATATTGCACATAAATTCCGTTTAACATGTAGAAATTCTGATAAATATCTACGAGAACTTGTTTGCAAATATCCATCTAACCAGTCGAAGAGCGTCGATGATGACAATGATCAACATGATACCGCTAATAATATCTTGGAATCATCGAAGATGGTTGCTACTAGATTAAAGGCGACGGCGGTCACTGTTGGACAGCAAGCAGGTCAGAATGTAGATAAAACACAAAATTTAATTGCATATGAAGAGGTGGCGGTAAAAAGGATGGATGAAGCTGACAACCTGGTAGATCCTAATTTGGCGGACCATAAAGACGAATCAGATGAGGTAGCGCTGCTTCGCATTACTAATAATGAAAGTAAGGCACAAATAAATGATACACATACATGCCACATTAGTGACGATGATGATATGGATCGTCATGATACCGCTGATAGTCTGGGCTCGGAATTATCAAAGATGGCTTCCCTTAGATCAAAGGCTGTGGTGGCCACTGTTGGACAGCAAACAGGCCATAATGCAATTAAAACCGAAGATTCCATGAAATATAAAGAGATGGCggataaaacacaaaaattaattgcaGATGAAGAGGTAAAAAGGATGGATGAAGATGATAACCTCGTAGATCTTAGTGCGGAGGAACATAAAGACGAATCTGATGGGATGGCACAAATCAATGATACACATAGATGTCACATTAGTGACGATGATTATAAAGAGTTCATTGATACCGCTGATAGTCTGTACTCGGAATCATCAAAGATGGCCTCTACTAGATCAAAGACCGTGATGGCCACTGTTGCACAGCACGCAGGCCATAATGCAATTAAAACCGAAGATTCCATGAAATATAAAGAGATTGCAGAAATTTGGATGGATGAAGATGACATTCGGGCAGACCTTATTGCGGAAGACCATGTAGATGGGTCATCTTGGTCGCCGTCCCAAACACATCGACAAAAACAACCAGTACAACAGCAAACTGATGGAAAGAAAACTGAAAGAAAGAAGAGAAAAACTACTGATGGGACAGCCGTGGTCCGTACTGCTAGTAATGATAGTAAAGCACAAACTAGTGATACTTATATATGTCACATTTGTTGTCATATGTATCGAGGAAAATGTGCGAAATATTCACTAGAGGCGCATATGAAACAACTTCATAGCGACGAACCATTGGCATGCAAAATCTGTTCGATGACGTTTATAACAAAGTATTGTCTAAAACGCCACATATACAAACACACTGGTATGGGACCATATTCATGTCAATATTGTGAACGTCGGTTTGCTGATCGCGCCCTTTTGCTAGGGCATGAGCGCAAGCACCGCAACAAACTTCCTTTCAAATGTGAAACCTGCGGCAAAAACTTCAAATATGAAAGAGCTGCAAAAAAGCATATGCTGAGGCATACAGCGGAAACACGTTTTAGTATTGGACAGCAAGCAGTTCATAATGTAGATAAAACACAAAATTTAATTGCAAACGAAGAGGACCATAAAGACGAATCTGATGGGGTAGCGGTGCTTCGTATTACTAGTAATGAAAGTAAAGCACAAATCAATGATACGCATACATGTCACATTAGTGACGATAATGATAAGTTCATTGATACCGTTGATAGTCTGGACTCGGAATCAGCAAAGATGGCTTCTACCAGATCAAAGGTCGTGGGGCATGAAGAGGTGGCGGTAATACGGATGGATCAGTCGCCGTTCCAAGCACATCAGGAAAAACAACCAGTGCAACAGCAAACTGATGGAAAGAACACGGAAAGAAGGAGGAGAGAAACTACTAAAGCACAAACTAGTGATACTTATATATGTCACATTTGTTGTCATATGTATCAAGGAAAATATGCGAAATATTCACTAGAGGCGCATATGAAAAAATGTCATAGCGATGAACCATACGCATGCAAAATCTGTTCGATGACGTTTATAACAAAGTATTCTCTAAAACGCCACATGTACAAACACCATGGAATGGGACCATATTCATGTCAATATTGTGAACGTCACTTTACCGAGCGCTCAATTTTGCTGGAGCATGAGCGCAACCATCGCAACGAACGTCCATACACATGTAAAACCTGCGGCAAAAGCTTCATAAATGCCAGGGATGTAAACGAGCATATGCTGACGCATACAGGGGAAAAACGTTTTTATTGTGGCATTTGTTATAAGGGTTTTAAACAGAGCCAACATTTGACTGGCCATTTGAAATCGCAAATACATCGAGACGATCCACTCGCTAAGTTGCTGCTGGAGAAAAGAAAGCGTAGAAATCGTGGTGAACAGAAAAAGGAAGCTAATGAATGA
Protein Sequence: MATRNRAETNGAGIEKIEEEFSFRRLNLTSSCRICLQSGKEGEEMAAIFDQYADDVCLYEKIESCGGIKILTNPELPRKICKKCNGYLDIAHKFRLTCRNSDKYLRELVCKYPSNQSKSVDDDNDQHDTANNILESSKMVATRLKATAVTVGQQAGQNVDKTQNLIAYEEVAVKRMDEADNLVDPNLADHKDESDEVALLRITNNESKAQINDTHTCHISDDDDMDRHDTADSLGSELSKMASLRSKAVVATVGQQTGHNAIKTEDSMKYKEMADKTQKLIADEEVKRMDEDDNLVDLSAEEHKDESDGMAQINDTHRCHISDDDYKEFIDTADSLYSESSKMASTRSKTVMATVAQHAGHNAIKTEDSMKYKEIAEIWMDEDDIRADLIAEDHVDGSSWSPSQTHRQKQPVQQQTDGKKTERKKRKTTDGTAVVRTASNDSKAQTSDTYICHICCHMYRGKCAKYSLEAHMKQLHSDEPLACKICSMTFITKYCLKRHIYKHTGMGPYSCQYCERRFADRALLLGHERKHRNKLPFKCETCGKNFKYERAAKKHMLRHTAETRFSIGQQAVHNVDKTQNLIANEEDHKDESDGVAVLRITSNESKAQINDTHTCHISDDNDKFIDTVDSLDSESAKMASTRSKVVGHEEVAVIRMDQSPFQAHQEKQPVQQQTDGKNTERRRRETTKAQTSDTYICHICCHMYQGKYAKYSLEAHMKKCHSDEPYACKICSMTFITKYSLKRHMYKHHGMGPYSCQYCERHFTERSILLEHERNHRNERPYTCKTCGKSFINARDVNEHMLTHTGEKRFYCGICYKGFKQSQHLTGHLKSQIHRDDPLAKLLLEKRKRRNRGEQKKEANE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -