Basic Information

Insect: Urophora cardui
Gene Symbol: Bcl11a
Assembly: GCA_960531455.1
Location: OY482671.1:44327624-44330095[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 8.4e-06 0.0011 20.6 0.8 1 23 365 387 365 387 0.97

2 5 0.0029 0.39 12.6 4.9 1 23 393 415 393 415 0.99

3 5 9.3e-07 0.00012 23.6 3.2 2 23 656 677 655 677 0.97

4 5 1.2e-05 0.0016 20.1 3.3 1 23 683 705 683 705 0.99

5 5 2.2e-05 0.003 19.3 0.4 1 22 713 734 713 734 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	8.4e-06	0.0011	20.6	0.8	1	23	365	387	365	387	0.97
2	5	0.0029	0.39	12.6	4.9	1	23	393	415	393	415	0.99
3	5	9.3e-07	0.00012	23.6	3.2	2	23	656	677	655	677	0.97
4	5	1.2e-05	0.0016	20.1	3.3	1	23	683	705	683	705	0.99
5	5	2.2e-05	0.003	19.3	0.4	1	22	713	734	713	734	0.97

Sequence Information

Coding Sequence: ATGCCAGTGGTTGTTACTGCTTCGACAATAAAATCAACAATATCTATGACAAGCCCTTCATCGAGTTTAATTCCCTCACCATCATTACATCCCCCAATTAGTCAGCCTGCGAAATCTGATAGCTCTATTACTAACCGCGACATAATTAGCGACAGCGCAAGTGCCGCAAACTGTTTGCCAGCGATACCATCTACTCGGCATACAGACGCAGtccaacagcagcagcagcaacaacaactgcaAATTCAGCAACGATTTCAACAACATCGAGTAGCCGCTGCTGCTGTTGCAGCCGTTGAGCAGCataaacagcaacaacaaaataatatAACTGCGATGCAGAATGCGCAAAATTTGGCAGTTGCTGCAGCTGCCGGTATTCGTCATCACAATTTATTACCGCCTCCAGATATGCATGCGAACCCATTCAGTTTACTGCGAATGCCTTTGCCACAAAATCCTGCAGTTCCTACCATTGCACCCCTATTTTCGCGATCTCACTCCGATCATTACAGAATGGGACAATTGGTGTCTGAGCAATTTAGGCACCATGGTCTCAATTTAGCAGCGGCTGCTGTTGCAGCCGCAAGTTCTCTAACTTCGGCACAATCTGGTGGTTCACAATACAATCAATGCAATAGCGGAACGTCAGGAAGTGCGATGGAGCCCCGACCACCATCGAACAGTACTAACCAGCGAAGCTCCGCGCCACCAACATCATTACCGCCACCAATAATTATTCCACCGCCGAATAGCGCGAATCCCGGTTCATCACAGGCTAGTATGACTCTCGAGCCCCAGATGGATTTTTATTCGCAGCGATTGCGACAGCTTGCAGGAACAACAAGCCCTGCAGCTGGAAATATTGTTAACTCGAGCTCGCCGAGTCCACGACAAAAGCAATCGCCGCATTTCGCGAGCCCATCGCCATCTCAACTACCTCCTACACCTGTAACAAACAGTACACGACCGCAGTCGCTAACTCCTCCACATAACATCGATTCACTGAATcaagaaaatgaaaaaattaattccACGCCCCGATCAGCGTCTACACCACCATCGAAGCCCAATCAAGACAATGTCGCCGTATTCGCATGCGATTACTGCGAGAAAAAGTTTcgatttgaaaataatttaattattcATCAAAGAATACATACTGGAGAAAAGCCTTACAAATGTACAGTATGTGAATTTGAGTGTTCGCACATTAATAAATTAATGAAGCATATGAGAGTACATCGTAGTCCCGATGATGGCACTAGTAATGCCGGTTCTGTAGACTCTAATGAAGCCGGGGATTCAGAAGCTGATGCTGACGCAGAAGCAGATACAGCTGACGGCGAAGAAGATAACTTAGATGAAGATGGTATGGATGAAGACGATGATGAAGATGGGGAAGATGGAGACGACATAGATTATGAAGCCGAAGATCTGAGCGTTAGTAATCGGTTAGATGGTAAAAGTGAAAGTCCTAAGATCACAAACACCGGACCTAAATCATTAGTGGGCGAACTTATGGATAAATTCGGCTTATCAAACATAGCACAATACTCTGAAGCTTATAAGCAAGCATTACAAGAGTCTGGAAAATTCCAATATCTAACGAATAAAGATACAGACAATAAAAACTCAAATAATTCAGGATTATCGCAGATGTCAGATAAGTTAAATGGTTTCCCAGCGGCATTGCGTATACGCGATGAGTTATCAAAAGGTATGTTCCACCAATCATCACAACCTGATGGTCCCGGTCAAGTGCCACTATTTAATCCTTTCCAAAATCCATTCGAATTATCAAAGCGGGTTAAAATGGATGGCAATGACTGGTGGAATATATCAACATTACATCGGAATGAGTCACTATTTGAAAATCTCAAAATGAAACCAATGGGATTGGGCTCAGGCAATTCAATATCGCAAACCCCTATTCTGAAAAAGGATAATCGCCAGCGCAACGACACGTGTGAATTCTGTGGAAAAGTGTTTAAGAACTGTTCAAATCTAACTGTACACCGGCGCAGTCACACCGGCGAAAAACCATACAAATGTGAATTGTGTTCCTATGCATGTGCGCAAAGTTCTAAACTAACGCGTCATATGAAAACCCACGGGCGCACTGGAAAAGATGTGTACCGGTGCCGCTTCTGTGATATGCCCTTCAGTGTGCCATCGACACTGGAAAAACATATGCGCAAATGCGTTGTAAATCAGGGAAAAGCGGCAGCGGCCGCAGCAAACGCTGTTGCAGCTGCACAAGCTGCGGCTGCAGCTCAGCATCTGCAATCGCAGCTACCAGCGCAAATATCACCTGTCAGCTCGCTTTCAACCTACCCACCTCAATATGTTGGCATTACTGGGAATACCGGCAGCAATATGTCACTGCCCGCTAGCATTAGTGGAGAAATGGACCCAAGTCCGCCTACAAGTCTGCCAAATCACCCAATCGCCTTGAAAGAGGAGGCATGA
Protein Sequence: MPVVVTASTIKSTISMTSPSSSLIPSPSLHPPISQPAKSDSSITNRDIISDSASAANCLPAIPSTRHTDAVQQQQQQQQLQIQQRFQQHRVAAAAVAAVEQHKQQQQNNITAMQNAQNLAVAAAAGIRHHNLLPPPDMHANPFSLLRMPLPQNPAVPTIAPLFSRSHSDHYRMGQLVSEQFRHHGLNLAAAAVAAASSLTSAQSGGSQYNQCNSGTSGSAMEPRPPSNSTNQRSSAPPTSLPPPIIIPPPNSANPGSSQASMTLEPQMDFYSQRLRQLAGTTSPAAGNIVNSSSPSPRQKQSPHFASPSPSQLPPTPVTNSTRPQSLTPPHNIDSLNQENEKINSTPRSASTPPSKPNQDNVAVFACDYCEKKFRFENNLIIHQRIHTGEKPYKCTVCEFECSHINKLMKHMRVHRSPDDGTSNAGSVDSNEAGDSEADADAEADTADGEEDNLDEDGMDEDDDEDGEDGDDIDYEAEDLSVSNRLDGKSESPKITNTGPKSLVGELMDKFGLSNIAQYSEAYKQALQESGKFQYLTNKDTDNKNSNNSGLSQMSDKLNGFPAALRIRDELSKGMFHQSSQPDGPGQVPLFNPFQNPFELSKRVKMDGNDWWNISTLHRNESLFENLKMKPMGLGSGNSISQTPILKKDNRQRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRTGKDVYRCRFCDMPFSVPSTLEKHMRKCVVNQGKAAAAAANAVAAAQAAAAAQHLQSQLPAQISPVSSLSTYPPQYVGITGNTGSNMSLPASISGEMDPSPPTSLPNHPIALKEEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -