Basic Information

Insect: Urophora cardui
Gene Symbol: -
Assembly: GCA_960531455.1
Location: OY482674.1:127053050-127055434[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.048 6.4 8.8 5.3 1 23 317 340 317 340 0.97

2 8 0.033 4.3 9.3 5.3 1 23 350 373 350 373 0.95

3 8 0.00081 0.11 14.4 0.2 2 23 383 405 382 405 0.94

4 8 0.0035 0.46 12.4 0.1 1 23 411 433 411 433 0.98

5 8 2.8e-06 0.00036 22.1 3.2 1 23 439 461 439 461 0.98

6 8 0.0038 0.5 12.2 0.3 1 23 466 488 466 488 0.96

7 8 1.5e-06 0.00019 23.0 1.4 1 23 494 516 494 516 0.97

8 8 0.0052 0.69 11.8 3.8 1 23 522 545 522 545 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.048	6.4	8.8	5.3	1	23	317	340	317	340	0.97
2	8	0.033	4.3	9.3	5.3	1	23	350	373	350	373	0.95
3	8	0.00081	0.11	14.4	0.2	2	23	383	405	382	405	0.94
4	8	0.0035	0.46	12.4	0.1	1	23	411	433	411	433	0.98
5	8	2.8e-06	0.00036	22.1	3.2	1	23	439	461	439	461	0.98
6	8	0.0038	0.5	12.2	0.3	1	23	466	488	466	488	0.96
7	8	1.5e-06	0.00019	23.0	1.4	1	23	494	516	494	516	0.97
8	8	0.0052	0.69	11.8	3.8	1	23	522	545	522	545	0.98

Sequence Information

Coding Sequence: ATGCTTTGTGGTGCAATAGAAGTATTAGACGAAGAATACAATAAAAATAAGCACAACGGCTCGGAAGTGCGCGAAGATTGGCGGCGTTGGTGTCGCCTTTGTGCAAAAGTGGACAAAGAGAGTATAAATATTTTAACCAAAAATGAATATATAACAACAAATGGAAACAACAAAATGGAAGTGGAGGAGGAGCATAACGAATTGAGGCTGTCTTGGACGATTGTAAAATACTTTGATGTACAgATAAGCCCCCATGATCAATTTCCCATACTACTATGTACAGAATGTTTTGCATTGATGGAGTCGCTCAAAAAATTCAGCGAACGTGTCGCAAGAGTGCAAGAAATGTACGACGAACTTCAACATTGTCAACACAGCAGTACACAGGCAGACCTGCAAGCTTTGCGTTTGAGGTATGGTGTATTGGAAGAGGATAGACCGCATGATTTAATCTATTACTGTGCGCCAGGCGATATAAGTTTGTATGGAGGACGAGGacaattaacaataaataaTTGTGATGGCGAGAAAAAGTGCATTGCTGAAGAGGCTTATATAGTAGCAACCGAGCTGCAAGAACCAAGCGCTGCTGGTGATATAAAGAAGGAGAACTCAAGCAATGATTTCATTATTAAtcaagatgaagatgaagaagaTGTGCTCGACTATGATGAGAATGAATACGCCGATGATGGAGAAGATCCTTTCGGCAGCGATGCCGATGAAAATTCTAAAGCTGAAGATGATGACCAGATTGTAAACGATGAAAGTGAAAATAATGTTACAATAAAGACTGAAACGAGTTTACcaaaagagaaaaaaattataaaaaccaaaacaaaatcAGTGAAAATGCGTAAAGCAAACGTAGAAAATATAGAGGAGGGTGAATCGCTCGCCAGTGACGAACAGTGCGCTAATGACGGCGAACGACGACGTGAAAAACTCTTCAGATGTGTCGAATGTTGCAAAACATTTAAACGTCCCACATTCTATCGCCTGCACATGGAACGCAAGCACGCCAAAACGGATGCCGCCGTACCATGTTACAGCTGCACCCAATGTGCGCTCACCTTTAATACACGCAATCAATTGTCGCATCATCATACCATCAAACATAAATCAATTGCCGAAAGGCGTATAATACCTTGTCCATattgtaaacaaaaatttccCACAAAAACGTATGTAGCGCAACATATTAAATTTGTACATATGAATGAGCGACCATTCATTTGTGAGGAATGTGGTGTGGCGATGCGTTCGATGGTACAGCTGAAGCTGCATATGCTAACTCACACCGATTATGCGCCCTTTGAGTGTGAGGTGtgcaaaaaatgttttaagAATCAGGATCGTTtgaagAATCACATGGAAATCCACAATCCCAATAAGCATATTTGTGCTGAATGTGGCCTACAATTAAATTCGCGTGTCACCTTAAATCGTCATCTGTTGGTGCATTCCGATGTTATGCAGCATAAATGCGATTATTGTGGGCGTGCCTTTAAACGTGCCAAAGCGCTGAAAAATCATCTTATACTCCATACCGGCCTTAAACCATATACATGTGATTTTTGTGATCGTACATTTGCAAATGGTTCGAATTGTCGTACGCATAAGCGTAAGGCGCATCCAGAGGAATTGGCTGCACAAGAAGCGGCAGGTGGTAAGACGAATACACCTAATATACCGAAGTTGGCGGTGCTGAAGTCAGTTACACAAGCAGGCGAGAATCTTGCGCCCGTAGTGTCCAAGCTAAGCGGTAACTTTGCATTTGGCAAGAAGCCTCAACTATCAAAAGACAGTATTGGTATTTTTAGTAAAAAGAAGAGGCAGAAGTTATTTAAAGATAATGCAGATGCAAAGtctgcagcagcagcaacagcaacaactacaacaacaccaacaactaCGTTCCTAAATGTAGAATTAAGCGCCAGTCCAAATATCAAGCAACCAATTGATGCCAATCAGCCTCTTCTTTCTCAACAGTTAACGGACGcgcaaaagcaacaacaacaacaacagcagcaaccaTCTTCTCAGCAACTACTTCCGCTTACACCACAACAAGTCCAACAACAAACAATAATGGCGCCGACAAATGCAATGGCAAACTCGTATCACTGTTAA
Protein Sequence: MLCGAIEVLDEEYNKNKHNGSEVREDWRRWCRLCAKVDKESINILTKNEYITTNGNNKMEVEEEHNELRLSWTIVKYFDVQISPHDQFPILLCTECFALMESLKKFSERVARVQEMYDELQHCQHSSTQADLQALRLRYGVLEEDRPHDLIYYCAPGDISLYGGRGQLTINNCDGEKKCIAEEAYIVATELQEPSAAGDIKKENSSNDFIINQDEDEEDVLDYDENEYADDGEDPFGSDADENSKAEDDDQIVNDESENNVTIKTETSLPKEKKIIKTKTKSVKMRKANVENIEEGESLASDEQCANDGERRREKLFRCVECCKTFKRPTFYRLHMERKHAKTDAAVPCYSCTQCALTFNTRNQLSHHHTIKHKSIAERRIIPCPYCKQKFPTKTYVAQHIKFVHMNERPFICEECGVAMRSMVQLKLHMLTHTDYAPFECEVCKKCFKNQDRLKNHMEIHNPNKHICAECGLQLNSRVTLNRHLLVHSDVMQHKCDYCGRAFKRAKALKNHLILHTGLKPYTCDFCDRTFANGSNCRTHKRKAHPEELAAQEAAGGKTNTPNIPKLAVLKSVTQAGENLAPVVSKLSGNFAFGKKPQLSKDSIGIFSKKKRQKLFKDNADAKSAAAATATTTTTPTTTFLNVELSASPNIKQPIDANQPLLSQQLTDAQKQQQQQQQQPSSQQLLPLTPQQVQQQTIMAPTNAMANSYHC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -