Basic Information

Insect: Urophora cardui
Gene Symbol: -
Assembly: GCA_960531455.1
Location: OY482674.1:127198406-127208672[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.26 34 6.5 1.8 1 23 469 492 469 492 0.92

2 8 1.3e-06 0.00017 23.1 2.7 1 23 500 522 500 522 0.98

3 8 0.00088 0.12 14.2 2.0 1 23 531 554 531 554 0.95

4 8 5.4e-05 0.0072 18.1 0.1 2 23 561 582 560 582 0.96

5 8 4e-06 0.00054 21.6 3.4 1 23 588 610 588 610 0.98

6 8 0.00058 0.077 14.8 0.8 1 23 615 637 615 637 0.97

7 8 9.6e-06 0.0013 20.4 2.0 1 23 643 665 643 665 0.98

8 8 0.0011 0.14 14.0 6.4 1 23 671 694 671 694 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.26	34	6.5	1.8	1	23	469	492	469	492	0.92
2	8	1.3e-06	0.00017	23.1	2.7	1	23	500	522	500	522	0.98
3	8	0.00088	0.12	14.2	2.0	1	23	531	554	531	554	0.95
4	8	5.4e-05	0.0072	18.1	0.1	2	23	561	582	560	582	0.96
5	8	4e-06	0.00054	21.6	3.4	1	23	588	610	588	610	0.98
6	8	0.00058	0.077	14.8	0.8	1	23	615	637	615	637	0.97
7	8	9.6e-06	0.0013	20.4	2.0	1	23	643	665	643	665	0.98
8	8	0.0011	0.14	14.0	6.4	1	23	671	694	671	694	0.96

Sequence Information

Coding Sequence: ATGTGTTCTATAAGCAGTACAGCCGGCAAGGAAATGGCTGGTGGTACTGCATCTTTGAGTGACTGGCGCAATTGGTGTCGTTTATGCGCCAAGGAGGATGCACAAAATAGGAATATATATTTGAAAGAAGAGTTCATACATAATGAAGAGCACTTAACAGCTGAAATGCTCATCAGCGTAATAAACAACTATTTTAGCGTGGAGATTCAAATGCTAGATATACTTCCACAACAATTATGCACAGAGTGCTTTACATTTCTCGAAACACTTATAAGCTTTCAAGGACGAGCTGTAAAAGTGCAGCAAATGTATGCCGAATTGAGGAATCATTCAGAGTCTAATATTCAAACTAATTATTTGCGTTTAAAGGAGGAGGAAGTCGCAAAAACAGATAAAATATTTTCTATAAGCAGTACAGACGGCAAGGAAATGTCTGGTGGTACTGCATCTTTGAGCGACTGTCGCAATTGGTGTCGTTTATGCGGCAAGAAGGATGGGCAGAATAAGAATATACGTTTGAAAGAAGAATTCCTACATAGTGAAGAGCAAATAACAGCTGAAAGGCTCATCAACGTAATAAACAAATATTTTAGCGTGGAGATTCAAATGCTTGATATGCTGCCACAACAATTATGCACAGAGTGCTTTCCATTTATCAAAACACTTATAAGCTTCCAAAGGCGCGTTGTAAAAGTGCAGCAAATGTATGTCGAATTGAAAAATCTTTCAGACGCAAGCTTCCAAACTGAAGCTCTGCGTTTAAAGTGTCATTTATTGAATGCGGCGAGCTCAGAAGAATCATTGGTGGCGACCATGGTCATAAAACAAGAGGAGGAAGTCGTAATAGGAGATAAAAGTGTGTGGGATTTTCAAGGTGAGGAAGCCATGGTCATTAAACAAGAGGAGGGGCAGGAAGTCGCAACAGCAGATAAAACTGTGTTAGAATTTCAAAGTCTGGAAGACATGGACATTAAACAAGATGAGGAGGAGGAAGTCGCAATAGCAGATGAAAGTGTGTGCGATTTTCAAAGTGAGGAAGCCATGGTCATTAAACAAGAAGATGAGGAGGAGGAAGTCGCAACAGCAGATGAAATTGTGTCCTATTTACAAAGTCTGGAAGGCATGGACATTAAACAAGACGAGGAGGAGGAAGTCGCAACAGAGGATGAAAGTATGTGCGATTTTCAAAGTGGGGAAGCCATGGTCATTAAACAAGAGGAGGAGGAGGAAGTCGCAACAGCAGATGTGTCCTATTTTCAAAGAGGAGAAGCCGCTGATTACGAAGATAGACCGCTCGGTACAACATCGGAGGACAATATATACCGTGATGCCAAGGAAGTCTATAACGATGTGCATATATGTGAAACCGAAGTCACAGCACCAGGGTCCGCGTCTGAgtacaaatacttttgtataAAATGTCCACAACGGTTTCGAATCAAATCAGCCTATAGCCAACACTTGAATAAAAAACATGGCATGAAATTAAAAACCACATTTTCCTGTAGCACATGCCAGCGAAACTTCAAAGATCCCTCTGGCTTCAAGCGACACATGCGAACACATCGCCCAAAAGCAGAAACGAGAATATACCCATGTCCGCAATGTGATCGCAAATTCCAAACAATGCACAATGTGAGAACACACATTAAATTCGTGCATGAAGATACACGACTACTGAATTGCGAAGTGTGTGGTGTAGCGACTCGAACTCAATATACGTTACGTGCACATATGCTAACGCATACCGATTATGCGCTCTTCGAATGTGATGTGTGTAAGAAGTGCTTTAAAAGTCAAGGCCGGTTGAATaaacatatgaacatacacagCTCCGAAAAGCACCAATGCAGAGAATGTGGCTTGCAACTGAACTCGAAAGTAACTCTCAATCGTCACATGGCAGTACATTCCGatgaaaataaatatagatGTGATTATTGCGGAACGACTTTCAAATACGCCACCACGTTTAGGAGGCATTTGATGGGGCATTGTGGCTTGAAGCCATATTCATGCCAATTCTGTGATAAAACATTTACGGATAGTTCTAACTGTCGTTCGCACATGAATCATATACATCCAAGTGAGTTGGCTCAGATGCCCACGTCGCACGAATGGAAGCTTACCAAAAATACACCGACAATAGCTGCGTTGAAAGCGATGTCGCAGAAAGGTCTCGGCTCAGTAGGCGACCGCACAAAAcatgaaatgaataaaaaacaaatagccTCGGATCCCTGCACGGGTAACGATGCCGCCGTTGGACTTGGCGATAAAGTAGTAACCAACCCCTCGGGTACCGCTAAGACGGCGCCGAGCAGGCCTTCACGGCCCACATCACAACTTCGACCACCTATGCAAGCAAGCAGGAAGACTAAACCCCTTGAGGGTAAGCCGACTACTGCCGTCAAAGCTGGTACAGCTAAGCCCCTTGAGGGAAAGCGACCACCAGCTGAGCTGGCACGGGTGGTCTCCCCAATCCCTCAACCGGGCACCTCTGAACGGCAGGCAGTGGATAGCAGCACCAAGTCCTCCACGGACGAAGTGCAAGCCCCTGCTCCTGCCAGGGACTCTCTTACCAAGCCCGCTGAACACCCCGAGTGTTCTAAGGCTAGTAAGAGGATTCCGATGTCGGTGCGCAGCCAGCGAAATGTTCGCAGCGCCGCCAAGATCGTGGAGAGGACTAAAAATCTTCCCTACGACAAATTGACGGCGGAGCAGAAGAGTTCGTTGGTTTGGGCAAAGAAGATTCTCGCTGCCAAACAGGCTAAAGCGACTTCCGGTCCGACAACCACCCCCCAGTCTGGTCCCTCGACATCTAACCAGGCACTGACCTCAAAGAGACCCCGATCTCTAGAGAACGCTTCGAACGTTCCAAAGAGGCACAGGCCTTCGAACACACCTCCTGCCCTGACCAAAACTTTCAGCGAGGCGGCGAAAGCCACCTTAACGCTGGCAGTTATGGACCGCGGCCACCCGGACGGGAACCTGTCCCCGGAAAAGTGGAAGATGATCCTCATAGGTCTTCTCAGGAACTATGAGGAGCTTCTGGACCGTTTTCCGGGGCCTCCTCCTGATATCCGGGATGGCGGATGGCATCAGGGCAGAATAAAGCTCGTAACATACGCAGATGAGCGCTCGTACGAGCTTTATAAACTGGCTATGTCCGAGGTGGGTGAGCTGTGGCCCGGGTCTGACTTGGTTGCGGTCAGTAAGGAAGAAATTCCGAACAGACCGAGAGCCTGGGTCTGGGTCCCGGCTGAGCCATCTGATCCGGATAGAATTCTGAGGATCATCTCTCGCTCCAACGCGGAAATGCCCACAAGCGATTGGAGGGTAGTACGTGTTGGTGACGTGAGGGAGATGCAACGCCAGGTTGGGCTTGTCATAAGCGAGGCGTCTCTCCCGTGGATTGAGAAGCGAGGTGGTACAATCCGCTACGGCCTTTTTACCATCACGCCGAAAATCAGAAGGGATGATCCCCAGAAGGAGGATGAATTGGTAGCCGACGAGGACAACCCTGGTCTTCCGAGccttggggctgagggcagcgccttgagcgcacccgatccgcagggctctggggaagggggaCATTCTAAAATGCCGTATTTGTTTTTCCTCACTACAAATGTGTCTATATGA
Protein Sequence: MCSISSTAGKEMAGGTASLSDWRNWCRLCAKEDAQNRNIYLKEEFIHNEEHLTAEMLISVINNYFSVEIQMLDILPQQLCTECFTFLETLISFQGRAVKVQQMYAELRNHSESNIQTNYLRLKEEEVAKTDKIFSISSTDGKEMSGGTASLSDCRNWCRLCGKKDGQNKNIRLKEEFLHSEEQITAERLINVINKYFSVEIQMLDMLPQQLCTECFPFIKTLISFQRRVVKVQQMYVELKNLSDASFQTEALRLKCHLLNAASSEESLVATMVIKQEEEVVIGDKSVWDFQGEEAMVIKQEEGQEVATADKTVLEFQSLEDMDIKQDEEEEVAIADESVCDFQSEEAMVIKQEDEEEEVATADEIVSYLQSLEGMDIKQDEEEEVATEDESMCDFQSGEAMVIKQEEEEEVATADVSYFQRGEAADYEDRPLGTTSEDNIYRDAKEVYNDVHICETEVTAPGSASEYKYFCIKCPQRFRIKSAYSQHLNKKHGMKLKTTFSCSTCQRNFKDPSGFKRHMRTHRPKAETRIYPCPQCDRKFQTMHNVRTHIKFVHEDTRLLNCEVCGVATRTQYTLRAHMLTHTDYALFECDVCKKCFKSQGRLNKHMNIHSSEKHQCRECGLQLNSKVTLNRHMAVHSDENKYRCDYCGTTFKYATTFRRHLMGHCGLKPYSCQFCDKTFTDSSNCRSHMNHIHPSELAQMPTSHEWKLTKNTPTIAALKAMSQKGLGSVGDRTKHEMNKKQIASDPCTGNDAAVGLGDKVVTNPSGTAKTAPSRPSRPTSQLRPPMQASRKTKPLEGKPTTAVKAGTAKPLEGKRPPAELARVVSPIPQPGTSERQAVDSSTKSSTDEVQAPAPARDSLTKPAEHPECSKASKRIPMSVRSQRNVRSAAKIVERTKNLPYDKLTAEQKSSLVWAKKILAAKQAKATSGPTTTPQSGPSTSNQALTSKRPRSLENASNVPKRHRPSNTPPALTKTFSEAAKATLTLAVMDRGHPDGNLSPEKWKMILIGLLRNYEELLDRFPGPPPDIRDGGWHQGRIKLVTYADERSYELYKLAMSEVGELWPGSDLVAVSKEEIPNRPRAWVWVPAEPSDPDRILRIISRSNAEMPTSDWRVVRVGDVREMQRQVGLVISEASLPWIEKRGGTIRYGLFTITPKIRRDDPQKEDELVADEDNPGLPSLGAEGSALSAPDPQGSGEGGHSKMPYLFFLTTNVSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -