Ucar023664.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482672.1:128850805-128855446[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.93 1.2e+02 4.7 0.8 8 23 201 217 195 217 0.92 2 11 0.00062 0.083 14.7 2.2 1 23 355 378 355 378 0.97 3 11 0.015 2 10.3 4.5 2 23 396 418 395 418 0.96 4 11 0.0023 0.3 12.9 1.0 1 23 429 452 429 452 0.97 5 11 0.0023 0.3 13.0 0.1 1 23 500 523 500 523 0.96 6 11 0.13 17 7.4 0.5 2 17 531 545 530 552 0.71 7 11 0.0007 0.093 14.6 0.6 2 23 559 580 558 580 0.95 8 11 1.6e-05 0.0021 19.7 1.4 1 23 585 607 585 607 0.98 9 11 2.8e-05 0.0036 19.0 2.5 1 23 613 635 613 635 0.97 10 11 0.00022 0.029 16.1 1.4 2 23 641 662 640 662 0.95 11 11 0.028 3.7 9.5 0.9 1 23 667 690 667 690 0.97
Sequence Information
- Coding Sequence
- atgcAGTGCCGCGCTTGTATGCGAATAGACCGCGATTTGGTTAAAATGGTCTCCATAGTTTCAAAGGACAATAAAACATTGTATGATTACTACAATGTGTGCACGCAATTGAATGCCTCACCCAACGATACACTCCCAAATGTTTTGTGCACGATATGTTCTGAAGAGGTGCAAGCGGCCTTTACATTCAGGAAGAAAGCGTTGAAATCTGACGAGGAATTTCGCAAAGTTTTGGGAAAAGTTGAGCAAGTGCTGCCATACAGTCATGTAGAGGCGCAAATGGAAGTTCTACAGGAAATTGAAGAACCTAAGCATGATCCTTTGTACGTCTCTGAGCTTATAGAACACGAATCAATGCCTGCAATATTATCTAATGCAAGTGAAGGAGTTCAtgatttatttgaaaataatataaaaactGAGCCTACCGTGGAAGTATGCGATAATGAACCAAATGATGACCAAATTTTATGTGATAACTCTGAGAAAATAATACAAGATGTTGGGGAAAATTTTGCAAAAGACAAGCTGAATACTTCTGCAACTCATACTGTTAGCATTACAAATAATAAGGCAACATCTGATTGCACCATTTCCAAAAAGCGATATAAAGTGAAAAAGTCATTCCAGGCACATAGACGAATGAAACATACAAAACAAACAAATTCTAAAGCTAAATGCAAAACTATCACTGAACCTATAGAAAATGAATCAGCGGCTAAAATATTATCTAATTCAAATGAGAAAGTACATGATTTACCTGAAAAGGATATAAAAACTGAATCTACCATGGAAGTGTGTGATAATGAACCAAATGATGAGGAAATTTTATGTGATAATTCTGAGAAATTAAAAGACAAGCTGAAAAGTTCTGATAACTCTGAGAAATTAATACAAGATATTGGCGAAAATGTTGCTAAAGACAAGCTGAAAAGTTCTGATAACTCTGAGAAATTAATACAAGATGAAAATGTTGCTAAAGACAAGCTGAAAAGTTCTGCAACTCATACTAAAGTGGTAGAGCAAATCGCATCTGACACGGATACAAATAATGAGACAACATATGATTGTCCCGTTTGCAAAAAGCAGTATACATTGAGAAAGTCATACATGCAACATATACGAAAGAAACATGGACCCAATTCTAAAACGCCAATCGCTGAACCCATAGAAGACGAATCAACATATTGCACCCATTGCAAAAAGCAGTATAACGGAAGAAAGTCATACCTGCAACATATACGCATGAGACATCGAGTAGTTGAtacaaaaaataagaaaaaatttgaATGCATGATTTGCAAAAAACagtataaaataagaaagtcaaTGCAAATACATATACGAATCAATCATCCAGTGCCTGAGCTCGATTCGATCGGTGACGCCGCAAAACAAACAAATTCTGAAGCTGAATGCAGCAAAACCACCAGTTTAGAAGAGGGAGAAAAAGAATGCGCCAAAAATGTCGATGAAAATGTTGGAATGGAAAGAAAATATATATGCTCGGTTTGCCctcgtGAATTCCCCAGCAGAATAAGTGTTAGAGCACACGAGAGAAACACTCACTTTCGCGCAGAAAAAATTGTGGAATGCACTTATTGCTATAAAAGATTTAAATCGAATTATATTAAAATACATGTTAATCTTGTGCACATCGCCAATAGCAAGATCGTTTGCGACATTTGTGGCAACTCATTTAAAAGCTATCTCAACTTGCAGCTGCATAAAAAATTCCATTTAGAAAGAAAGTTTTCATGCACATTATGCGACAAAAAGCTAGTAAGTAAAACCGATCTTAAGGTGCATATGCGTTATCATACTGGCGAGTCGCCGTTCGCTTGTAATTTGTGTGATAAACGTTTTAAGACACGATCATTTTTGAACTACCATTTGGAAAAGCATGCGGGCAtaaagaaaaaatgcaaagaatGCGGCAAGGAATTTAGAGACATTAACCAATTGAGAATACATTCGTACAAACACACAGGCATGCCGTATCGTTGCACCGTGTGCAATTATGGATGTCCGATACGCGAGGTCTTGAGAAAGCACTTGCTACGCGTGCACAATAAGACATTGACTGATGCAGAATATCATGCCATGTTTAAGGCGAATACTGGTCGAATTCCGGTTATACCGGTTATATCAACGGTGGAGAAGGTGCAAACGGAGGCAGAGCAAACGAAAGACTAA
- Protein Sequence
- MQCRACMRIDRDLVKMVSIVSKDNKTLYDYYNVCTQLNASPNDTLPNVLCTICSEEVQAAFTFRKKALKSDEEFRKVLGKVEQVLPYSHVEAQMEVLQEIEEPKHDPLYVSELIEHESMPAILSNASEGVHDLFENNIKTEPTVEVCDNEPNDDQILCDNSEKIIQDVGENFAKDKLNTSATHTVSITNNKATSDCTISKKRYKVKKSFQAHRRMKHTKQTNSKAKCKTITEPIENESAAKILSNSNEKVHDLPEKDIKTESTMEVCDNEPNDEEILCDNSEKLKDKLKSSDNSEKLIQDIGENVAKDKLKSSDNSEKLIQDENVAKDKLKSSATHTKVVEQIASDTDTNNETTYDCPVCKKQYTLRKSYMQHIRKKHGPNSKTPIAEPIEDESTYCTHCKKQYNGRKSYLQHIRMRHRVVDTKNKKKFECMICKKQYKIRKSMQIHIRINHPVPELDSIGDAAKQTNSEAECSKTTSLEEGEKECAKNVDENVGMERKYICSVCPREFPSRISVRAHERNTHFRAEKIVECTYCYKRFKSNYIKIHVNLVHIANSKIVCDICGNSFKSYLNLQLHKKFHLERKFSCTLCDKKLVSKTDLKVHMRYHTGESPFACNLCDKRFKTRSFLNYHLEKHAGIKKKCKECGKEFRDINQLRIHSYKHTGMPYRCTVCNYGCPIREVLRKHLLRVHNKTLTDAEYHAMFKANTGRIPVIPVISTVEKVQTEAEQTKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -