Ucar018156.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482672.1:11290314-11302651[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 20 7.2 1.1 1 23 2042 2065 2042 2065 0.93 2 12 0.58 77 5.4 1.2 1 23 2270 2292 2270 2292 0.94 3 12 0.0047 0.62 12.0 3.3 2 23 2295 2316 2295 2316 0.97 4 12 3.5e-05 0.0046 18.7 0.2 3 23 2324 2344 2322 2344 0.98 5 12 1.3e-06 0.00017 23.2 3.6 2 23 2351 2372 2350 2372 0.97 6 12 6.4 8.4e+02 2.1 0.3 5 23 2385 2403 2383 2403 0.96 7 12 0.035 4.6 9.2 0.2 2 23 2442 2462 2441 2462 0.96 8 12 0.00028 0.037 15.8 0.8 1 19 2468 2486 2468 2490 0.93 9 12 2e-05 0.0026 19.4 1.2 1 23 2498 2520 2498 2520 0.98 10 12 0.0002 0.026 16.3 7.6 1 23 2526 2548 2526 2549 0.96 11 12 0.0019 0.24 13.2 6.5 1 23 2554 2576 2554 2576 0.98 12 12 0.0033 0.43 12.4 6.0 1 23 2582 2604 2582 2605 0.96
Sequence Information
- Coding Sequence
- ATGGGGGAGAACGTACAGTGTCCAGTATGCACGCTATTTTTGCATGCTGGCATGAACCTCTCCGACCATTTGGAAACGCATCCCAAGGAGCAAGTGATAAAAGCGCTTGTCCAATTGACTATATCGGGGGGCAGTATTGATGCTTCTGCAACGAAATCACTTACAGCATCCGTGAGTGGAGGTGGAAGTGGTGGTAGTAAAGATGCCGATGGTGACGAGGCCAAAAAGGACTCTGACAATAAAAATGCCAATCCACCACTAAATGCTTCTACTACTGGCCGCAATGCAGACAGCATAAAGGCAGCCGCAAATAATTCCAACTCAAATGGTGGAGCAACTCTTAGCAATGCAAACAACCATAGTCTAACTTTTTCTACCGGTTTTAATGCACTAcctacaacaataacaaaatcatTGACAGAAAATGCGGCTGCAGCTGCAGCTGCAACAGTTTCTTCGACAGCGGCAGCAAGATTGCCAATCGATATGGCGGTAAAGAGCGGTGCTGAGCATAAACTCGACACAACAGGCGCAATCATTGAGAAGGACAACAAATTAAAGGTTTCACACGATGGCGCAGCTACAGAGTCACCGAGGCGCGCTCTGCCAGCGTTGGCCGCAGCAACGCTAACAGCAACGGCATCAGTGCCGCCCATTGCCCACGGTGGTCAAGTAATGGTGCAGGGTCTTAGATTTGATAATTATGGGGCTGGTTATCAACAAACGCATGCAAAACAGTTGGTAGTAAGTCAATTAGagccgcaacaacaacaacagaagcagcagcagcaacagcgtcATCGGCAattacaacagcaacaacaacaacagcaccaacaacaacacaatCAACATCAACAGCAGCTAACGCAActacaacagcaaaaacaaaagccacaacaacaacacattGATAGTGCAGTAGCAACAACAAGCACGGCTGTAGCCGCAACACAGCGCGCACACAGCACATTACCGCCACCTCCTCCCCCACCGATGGTAACCGTGCCGATTGTCGTTGGCCAGATGCCGAATAAATTATTACAACCAGCACATTCAGCAAATTTATTTACAAACAATTTAACCACACATCGGCACGTTCCAATGCAGCATCCGGTTCAGCAGTCGCATCAACAACAGCAGctccaacaacagcaacaatatcAGCACCAACAACCAACAAATCAcaatcagcaacaacaacaacaacaacaacaacaacaacagccacaCCAGCAGCAACAAAACCTCAAAATATATTATTCAACAACAGCTATGCCGCCAGCAGCTCCACCCGGAATGCAGCTTTTCCCGTTCCATGCAGCAGCACAAATGCAACACCAGAAACCACCGCCTGCTTATGGTGCAGCGATAAGTCAAATTCGATCTCAAAACAGTCACAGCAAGAATAGCCACGCTAACGCCGATAAAATTCATATAGTTCAACAACATTTCCAAACTCAGCTACAGCTACAGCGCCAACAGCAACgtcaacagcagcagcagcagcaacaaaatgtaagacagcaacaacaacaacagccaccACATCAGCAGCGACAACATCAACCACAAAATAAGCAGCACCACAATCAACAGCGTTCCACAATACATGCACCGCAACAACAAGCAAGAGCAAATGAAGCTGCATCTCAGCAATCGCTTCtacatcaacatcatcatcatcagcaacagcaacagcacaCAGCACATGACGGCCAGCTGGCGATGAGTTCAAGGTCTTTGCTCGTAGCAAAGTCAACCGAACTGCTGCTACCACCACCGCCACCACCCGCACGACCACCCACAAATTTGCAGCATAATCAATTGCCACATCAGTTGACATATTTTGGAGCAGCAACAAAATCCGCAAACCAACGTGCAGCAGCAACAGATGTTACGGAGGGTAGCGGTACTAGTTCAACTGGTGCATCAACTTCTACACAAACACTTTCTGCTGCACCAGCTGCAGCAGCGGATGGCAGCAGTAGCAGTGCTGCAGCTGCAGCTGCGCCAAGTAATACCCCAGCCATAATATCGATTTCATCTGCTGGTGGCATGCGACAAGTTGCATCGCCATACAACTCCTTGCTGCTGGCAGCAGCACAATCACCCTCATCCGTCTTGCGTTACGCGGAATCGCCTGTAGCGCATTATTTGGAACGCGAAAATGGCGATTTTATTGTACAAGAAACGCCCAAACACATTGTGGAGTGCGTTGAAAAAGAGGATGGCGAATTCTCGGTTATCGAGCGTATATATCAATCACCTTTAAGCGTTTTACATATACATGAAGATGATGAACAAGAAGAATATATTGACGAGGATGTTGTCAATGACAATGCTGGCGATACAGATAGCGATATGAAAGACATCGGTGCTAAAGAGAAGGCCAACAACAACGCAGCTAATGAGCAAGTAACTAATAAAAAATGTGACGAACCCATGCAATTGGATGAAAGAGCTGAACGTGCGAAAAGTCCTGCAACAGGGAAAACTAGTAAAACACAAAATAATGCGAGCAAAACAGTGGAGAAGGGTGGCGACACTGCCGTAGACAATTCGGCTCCGCAATTAGACACATCCATCACGAGTGTTGCCAGTACAGACTCTAGTTGTGAGCCAAATTCAGCTACGAATTCATGTACAAACTCAAGTGGCGACGAATCGAGCGCGTTGTCGTCCAATGCAGCTTCCAGTTCAAACCAAATTTCCACATCTCACAATGCACCGGCAACGGTGAGAAAGCGCAGCTCTAAAAATACCATAACGGTATTAAGTGATGTACAATTAAATTTGGATGAATATCTCGATTTGGTTGGAAATATAATAGCATCTAGTAAAATAACAGCGAAAAGTAGTATGCTTACTGGATCTATGCCGTTACCATTGTTAAAAGTTGAAAAGGAAGAACCGCCTGACGATGATTACGAAATGTGTGAGAATGAGTCCAgcaaaatggaaaataaaaataaaattgaagagCGCGAAGAGAACGAAGAAGAGTGTTACGGAGAAAATAAGCTTAAAGAATTTCATACAACAACTGTAATTGAACCACCTACAACAAACGCCAATATAAATGAGACTGAAAATGTAGTTGAAAATAGTTGTAATAGCAATAAGATTAGAATAAATGACAGTGAAAAGGAGAAAAAGGCTATCCCAGCAGCATCAGCAGGGGCAGCAGCATGTTCCAGTCATGTGACCAGTGTTATACGCATGGCAATAACTAgtcaacagcaacaacagcaacaacagccaCAACAAACGCCAAAACTGCAAAAGGAACTGGAAAAGCTAGAAAAAGTACACACACCAGCAGGCAGTACAAACGAAATACAAACACAAAATCCGACGCCCAACGCTGCAACGCtaaaacaaacacaaacacaaacaaaagtGACATCGATAATTATACAAGATTTATCACGTCAACACATTATACAATTGGATGATGATGAACAACAATCATCTGAAGTGGAGCAGAAGCAAAACGTCGCGCTGACACAAAGTGCAAGTGACTTAAGGCAATCGCCGCCGTCGGAACAGGTAACAGCTCAACAAATGGAGACACAattgcagcagcagcagcagcagcagcaggaaCAGCGACAAGAACAGccgcagcaacagcagcaacaacaacagccgaAGCAAACTCAACCTTTAATTGCACTGCCATTGCCATTGCAGAAAAGAGGTCCAAAGAAGTTGATTATCAAGCCAAAAGCTAAAAAGACTGATGATGCAAACGACAACCTCACAGCCACAagcaacaaccacaacaacagcaacagcaatagAAATAAAGATTTTACGGATATAAAACCACAAGTAATTAGTAGTGCATATGCAGATGAAGTAGCGCTCGACGAGCAGCCCACCACATCCACCAGAGCACAAATGGAATTGAAAGAgaaattacaacaacaacaaaatgtgaAGCAAGTACCGCCACCTACGCATGCATTGATCAAAAGTGAGCCCAGCACATCATGCTACGATGCCACCAGCGCCAGCACCAGCACCAGCGCCAACAATAATCATCAACGCTCAATTGGTAACAACAATGGCTTCAATATTTTAGAAAATCACTTAAATTCCAGTTTGGATAGTAAAATCGTACCAATCGTACTCTGTAAAACTGAACATTTAACCGACCCACCAACCGCAACCACAACCGCAAGCACAACCACAACAGCAAACTATTTACATTCCCTAAAGCAAGAAGTAAAAGAGACTAGTAATGCCGCAGCaggcgacgacgacgacgacaacgacgacgacgacgatgaTACCGACTgcgacaacaacaacgacaacgaCATTGGCGCGCTTATAAACGATGATGCACGCGTTCTACTCGATTTTGCCAATTCTAAGAAATGTGTTGCATCATCACCACAACGCAATCAATCGGACGTAACCAATTTCCTCTCGGTCGCATCGATATTTTCCAACTCGGCGAAAAACACACTAAACCCAACAACAAGCCCTACAAAAACGGCGACCCCACACACGAGCGCCAGCAATGTGACCAGCGTTGATTCGGAAGCAGCTGCTTTGCGTTGTGAAGAAGAGGAATTTATGGCGCACGATGAGGTGCAAGATATTGTCATATCATCATCGTATTCACAATCGCAGTCAGCTTTAGATGTGCCCAGCACAGCAACCACGGCATCAAACAATAGCACTACATCGCAAGCTAAGGACTTGAGTCCTTCACgccaacagcagcagcagcaacaacaacaacaacaacaacagcatcaACAACAATCACTTTTGAATCACAGCTTTAGCGATTATCCATTTAGTTTTCTTTATGGAAATGGCGGCAGCGCAGGCTCGGCTGCACATGCAACCGATATCAAAAGTGGTAATTTCTCGGCGATATATCAACAGGCGACACAGGATGCCACAACGGCAGCCACATTGGCATCAGGCAGTAATACAATACATACCGATGACTCGACCGGTTCAAATCAActgcagcaacagcaacaacaacaacagcagcgaCAATCGAGCACCAATCATTTTGGTGGTGTACACCATCACGCCGCCGCACACGCTGAAACAGGCACATCCACAAACAACGGCACAACGCACCACTGGTATCACCAGGCAATGGCAACAGCAAACGCTGATTTTGAAGCTGCTTTGGCTGTCGATTGTAATGCGGCCATCGATGGCGCTGATGTGGGCAAATATTTAGATTTGGATACGTGCAAGCGTGAAGCTGCCAGCGGTATGCCGGCTGCTGCGCCATCATCAACGTCATCGTCCTTTGCCGCTGCTACAGACAGCGCTTGTACTGCGGATGCGCTAAATATACGCACCGATGAGAAAATGCCAGCTAAAGGTGAAATTTCTGGACAAGAAAGTAATTGCGATATTGAAAATTCATGGAGTCAGCCGATGTATGGCGAAATGTCTGCACGCTTTTTCAAAACAAGTTTTCCTAGCATATTTCAACACGAAAACGGTTGGAATCATGATGAATACTTCACCGTACAGGATCTAAGCACATCAGCAGCAGCTGCTGCGGGCAATAATGCTAACACTACTGGCCGTAGTGCCGGCAAAAGCTTTGATTTCCGCCTTCCCTTTGAAGCGACCACCTCAGCGGCAGCGTCGGTGGCGGCAAATGGTCTAGCCAATAGCAATGGCAATTTCCAGCTTTTCGCACGTCATACAGACGCATTACCATCGACATCGTCGTCCGCTACAAGCAAAAAGAAACGAAAACGCGACCATGCTGCCGTCGCCGGTGGCAGTAATGCTGCTCTAGATAGAATTGAAAAGGTAAAGTTGGCGCGCATACAGCCAACTGCAACAATAACATCGCAGCAATTATTGTACcaccaacagcaacagcaacaacagcaacaccaTGTGCTATCACAGCAACAGTTGCAGCTGcagcacaaccaacaacaatCATTGCTAACACATGAACCCCAACTACACACACAGTCCCATAACAATTCCAATACCGTCATTTCAACATCCTTCATGACAAATTTGACTGGCGGCGCCGCAGCCGCCGGCACCAGCGACTCTGAGAACACCATTGCTTTGCTGAGAGCTGAACAAAGGCGACAACGCAAGAAAATCTATCAATGTACCCATTGCAGTGCCGAATTTCCAAAGCTCAAAGATCGCAATTCCCACATGGTTTTGGAACACAATTATATACGTCAAAATCGCCGTTTGATATGCGTGCAGCAGCATCCGGGCGGTGCCGAAGGTGCAGCTTTGGCGGCAGCGGCGGCCGGTGCGGCGCCCTCAACATCCAATAATGCATTGCCGCTAAATATGGCGGATACTTCTAACAATGTACGTTCAGATAGTATGGAATTCTTGGATGACTCCAAACAAGCCATTGTTAAAATTGAGGTAGATAATGCAtatcaacagcagcagcagcagcaaacaACTGTTGGTGGTGGTGCGACCACGTCAACCACCGCAGCAGCTGCATTGGTGGCAGGCGGCCGACATGATGGTGGTGGCATCGCTGCCAAACAAGAATTCGTGACCGATGACAAACAAAGTATGGCATTAGTGGCTACGGGCGGCAGTGCAGCAGCAGCAGGAAATGCCAGCGGTGAAGCAAATGTGCGCGACGTTAGTGCCACTGCTGAGACAAAGCCCACACTCCAACAACCATTAGCAATGACCACACCAGCCACCAAATTAGCTGCGCTCTATCGCATGTTGGTATCTTATAATTTTTCCACATTGAAAGATAATCACAATTTGAGCGAAATGGAACAGAAAGTCATTGAACAATCGATATTCTTTTGCTATATTTGTCGTCGCAACTTCACATCGGTCAAGTTGTATGATGCACATTTGACGGAGCATCCGGCCGAATGTTttacatgtagcaaaacatttCAGCGTTGGAAGAATTTCTCATTGCATTTAAAACGGCATTTAGGTTGGAAGGAGTTTGGTTGTAATGTATGCGACAAGAAGTTTGTGGTGCGTAGCGCTTTAGTGGAACATATGCGTATGCATACTGGCCATACGCCGCTCAAGTGCAAAATATGCGGCAAATACTTCAAACGTTATTCGAATTTAACACAACATCGCAGACGTCACTACAAAAAAGTCATACGCAAAAAGGAATATGTTTGTCATTGTGGCGAAGTGTTGCCATCGAAAGCACGTTTCATTTGGCACAAGGAAACACACGATGCCAAACCGAAATGTTGTCCACATTGTTGTGATCGTTTTATGCACGCCAATTCATTGCGTCGTCACATACGTTTAGCCCATTCCGATAAGTTCGATTATACCGAACCGACGGAGTGTCCACTGTGTAAACAAATATTTGCCAAATCTTCGATGAAAGCGCACATGGCCACACATTCGATGGATACGCAACATGATTGTGCAATTTGCAATAAATCCTTTTCGAccaaatggaatttgaaaatacattcGTGGGTGCATGCCAATCGCACAGCCAAACCATTCAAATGTGAACACTGCCCAAAGGCGTTTGTGCGTGAAATCGACTTTAAGAATCACATGAATGCCCATAAACAAATCAAACCGTATACATGCGAATATTGTGGTTGTAAATTTATACGCAAATACAATTATATGCGGCATCGACGTGAACATCATGGCAATAAGAAATTTACATGTGATTTGTGTAAAAAGTCCTTCCATCGGCATTATTATCTAATCGAACATCGGCGTATACACACAGGCGAACGGCCATTCCAATGTACAATATGCGGCAAAAGTTCCACAACGAAAACCAATCATAATAAACATTTGAAAATACATCATTCACGTGATCCCTTCACTGTGGAGGCGTAA
- Protein Sequence
- MGENVQCPVCTLFLHAGMNLSDHLETHPKEQVIKALVQLTISGGSIDASATKSLTASVSGGGSGGSKDADGDEAKKDSDNKNANPPLNASTTGRNADSIKAAANNSNSNGGATLSNANNHSLTFSTGFNALPTTITKSLTENAAAAAAATVSSTAAARLPIDMAVKSGAEHKLDTTGAIIEKDNKLKVSHDGAATESPRRALPALAAATLTATASVPPIAHGGQVMVQGLRFDNYGAGYQQTHAKQLVVSQLEPQQQQQKQQQQQRHRQLQQQQQQQHQQQHNQHQQQLTQLQQQKQKPQQQHIDSAVATTSTAVAATQRAHSTLPPPPPPPMVTVPIVVGQMPNKLLQPAHSANLFTNNLTTHRHVPMQHPVQQSHQQQQLQQQQQYQHQQPTNHNQQQQQQQQQQQQPHQQQQNLKIYYSTTAMPPAAPPGMQLFPFHAAAQMQHQKPPPAYGAAISQIRSQNSHSKNSHANADKIHIVQQHFQTQLQLQRQQQRQQQQQQQQNVRQQQQQQPPHQQRQHQPQNKQHHNQQRSTIHAPQQQARANEAASQQSLLHQHHHHQQQQQHTAHDGQLAMSSRSLLVAKSTELLLPPPPPPARPPTNLQHNQLPHQLTYFGAATKSANQRAAATDVTEGSGTSSTGASTSTQTLSAAPAAAADGSSSSAAAAAAPSNTPAIISISSAGGMRQVASPYNSLLLAAAQSPSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPLSVLHIHEDDEQEEYIDEDVVNDNAGDTDSDMKDIGAKEKANNNAANEQVTNKKCDEPMQLDERAERAKSPATGKTSKTQNNASKTVEKGGDTAVDNSAPQLDTSITSVASTDSSCEPNSATNSCTNSSGDESSALSSNAASSSNQISTSHNAPATVRKRSSKNTITVLSDVQLNLDEYLDLVGNIIASSKITAKSSMLTGSMPLPLLKVEKEEPPDDDYEMCENESSKMENKNKIEEREENEEECYGENKLKEFHTTTVIEPPTTNANINETENVVENSCNSNKIRINDSEKEKKAIPAASAGAAACSSHVTSVIRMAITSQQQQQQQQPQQTPKLQKELEKLEKVHTPAGSTNEIQTQNPTPNAATLKQTQTQTKVTSIIIQDLSRQHIIQLDDDEQQSSEVEQKQNVALTQSASDLRQSPPSEQVTAQQMETQLQQQQQQQQEQRQEQPQQQQQQQQPKQTQPLIALPLPLQKRGPKKLIIKPKAKKTDDANDNLTATSNNHNNSNSNRNKDFTDIKPQVISSAYADEVALDEQPTTSTRAQMELKEKLQQQQNVKQVPPPTHALIKSEPSTSCYDATSASTSTSANNNHQRSIGNNNGFNILENHLNSSLDSKIVPIVLCKTEHLTDPPTATTTASTTTTANYLHSLKQEVKETSNAAAGDDDDDNDDDDDDTDCDNNNDNDIGALINDDARVLLDFANSKKCVASSPQRNQSDVTNFLSVASIFSNSAKNTLNPTTSPTKTATPHTSASNVTSVDSEAAALRCEEEEFMAHDEVQDIVISSSYSQSQSALDVPSTATTASNNSTTSQAKDLSPSRQQQQQQQQQQQQQHQQQSLLNHSFSDYPFSFLYGNGGSAGSAAHATDIKSGNFSAIYQQATQDATTAATLASGSNTIHTDDSTGSNQLQQQQQQQQQRQSSTNHFGGVHHHAAAHAETGTSTNNGTTHHWYHQAMATANADFEAALAVDCNAAIDGADVGKYLDLDTCKREAASGMPAAAPSSTSSSFAAATDSACTADALNIRTDEKMPAKGEISGQESNCDIENSWSQPMYGEMSARFFKTSFPSIFQHENGWNHDEYFTVQDLSTSAAAAAGNNANTTGRSAGKSFDFRLPFEATTSAAASVAANGLANSNGNFQLFARHTDALPSTSSSATSKKKRKRDHAAVAGGSNAALDRIEKVKLARIQPTATITSQQLLYHQQQQQQQQHHVLSQQQLQLQHNQQQSLLTHEPQLHTQSHNNSNTVISTSFMTNLTGGAAAAGTSDSENTIALLRAEQRRQRKKIYQCTHCSAEFPKLKDRNSHMVLEHNYIRQNRRLICVQQHPGGAEGAALAAAAAGAAPSTSNNALPLNMADTSNNVRSDSMEFLDDSKQAIVKIEVDNAYQQQQQQQTTVGGGATTSTTAAAALVAGGRHDGGGIAAKQEFVTDDKQSMALVATGGSAAAAGNASGEANVRDVSATAETKPTLQQPLAMTTPATKLAALYRMLVSYNFSTLKDNHNLSEMEQKVIEQSIFFCYICRRNFTSVKLYDAHLTEHPAECFTCSKTFQRWKNFSLHLKRHLGWKEFGCNVCDKKFVVRSALVEHMRMHTGHTPLKCKICGKYFKRYSNLTQHRRRHYKKVIRKKEYVCHCGEVLPSKARFIWHKETHDAKPKCCPHCCDRFMHANSLRRHIRLAHSDKFDYTEPTECPLCKQIFAKSSMKAHMATHSMDTQHDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREIDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDLCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -