Basic Information

Insect: Urophora cardui
Gene Symbol: RREB1
Assembly: GCA_960531455.1
Location: OY482671.1:151306398-151316712[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.023 3 9.8 2.1 1 21 320 340 320 342 0.95

2 13 0.00047 0.062 15.1 0.1 1 23 352 374 352 374 0.98

3 13 3.7e-05 0.0049 18.6 7.5 1 23 380 402 380 402 0.98

4 13 2.6 3.4e+02 3.3 1.9 2 19 711 728 711 728 0.96

5 13 0.023 3 9.8 0.0 2 21 744 763 743 764 0.94

6 13 0.17 22 7.1 0.1 1 23 948 970 948 970 0.97

7 13 3.1e-05 0.004 18.8 1.2 1 23 980 1002 980 1002 0.99

8 13 0.00097 0.13 14.1 2.2 1 23 1008 1031 1008 1031 0.97

9 13 0.0049 0.64 11.9 2.1 1 23 1375 1398 1375 1398 0.95

10 13 0.00014 0.018 16.8 0.3 2 23 1789 1810 1788 1810 0.97

11 13 0.23 30 6.6 6.3 1 23 1816 1839 1816 1839 0.97

12 13 0.013 1.8 10.5 0.5 3 23 2030 2050 2028 2050 0.96

13 13 0.0021 0.28 13.0 4.8 1 23 2056 2078 2056 2078 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.023	3	9.8	2.1	1	21	320	340	320	342	0.95
2	13	0.00047	0.062	15.1	0.1	1	23	352	374	352	374	0.98
3	13	3.7e-05	0.0049	18.6	7.5	1	23	380	402	380	402	0.98
4	13	2.6	3.4e+02	3.3	1.9	2	19	711	728	711	728	0.96
5	13	0.023	3	9.8	0.0	2	21	744	763	743	764	0.94
6	13	0.17	22	7.1	0.1	1	23	948	970	948	970	0.97
7	13	3.1e-05	0.004	18.8	1.2	1	23	980	1002	980	1002	0.99
8	13	0.00097	0.13	14.1	2.2	1	23	1008	1031	1008	1031	0.97
9	13	0.0049	0.64	11.9	2.1	1	23	1375	1398	1375	1398	0.95
10	13	0.00014	0.018	16.8	0.3	2	23	1789	1810	1788	1810	0.97
11	13	0.23	30	6.6	6.3	1	23	1816	1839	1816	1839	0.97
12	13	0.013	1.8	10.5	0.5	3	23	2030	2050	2028	2050	0.96
13	13	0.0021	0.28	13.0	4.8	1	23	2056	2078	2056	2078	0.99

Sequence Information

Coding Sequence: ATGCTCGCCACAGCAGCCGCCAGTACACAACCATCCACATTGGATGCCATCCAAACGAATATCGTCACAACAGAGATGGAGCGACGTGACTCATCAACGTCGGAGTCATCGTTGGAACATTTGGATTTGGGACGCACACCAAAGAAGTTAAGCTCACATTCATCGGCCACATCCACACCGCACACAACGGCCATCATCCACAGCAGCCATAGTCACAGTAATAAcacaaataaaacaaacaacaacacaTTTAACAATAATGTTATAAAGAACGAAGACTGCATAAGCAGAGCCTCCGCCGCCAACGCAGCGCCCTTACCCATGAATGAGGGTGAGCAGCAAAACGGAACAATATCGAACCGTTCGCAGCGTCAACATGAGTCCGATGAGACTAATGACTACGATGACGATGAGGAAGAATCAACCGATGAACAGCGTTCTAAGCAGAATTCAATGAGCGCAAGAGCACAACGCCATCACAAACGTCGTAGCACACATCAGCCACGATTGGACAAGCGAACTAGCGTACATTTGGAACTGAATGCCGACGATCCGAATTCGTTGCGTAAGAAATTTTGTTTCAATCGCAACACTTCAGCCTCTGAACAGCTAACGAATAATGAATCGGGCTTTGTGGACACCAGCAGTAGTAGTAGTCATTACCTGAATGCATCAGTAGTGTCTTTGGTGGCAGCGACGGCGGCGGCGTCAACGGCAGTAACCGCTGCTACAGCGTCTTCTACGCCGCCGTCAGCGCTAGCAGCAGAAGCAGTGGCTACAACGCTGCCGCTTGCGTCACTGCCTGCTGCGATCTCACGCTCGGCTTCGCTCTCGGCTGCCGGTTCGCATTGTTCGTCATCGGCTGCTTCGTCGCCACGGGGCTGCGGCACTGCCTCATCTGTTTCCGTATCTAGTCCGGAGTCGGGTATTGGCGATAGAGATCGCGAGGATATGAAGTTTGTGTGTACCATTTGCGATGTGGTTTCAGCGACACGTCACGAATTCACAAATCACATACGATGTCACAACTATGCATCGGGTGACACTGAGAATTACACATGCGCCATTTGCTCAAAGGTACTCTCATCTGCCTCCTCGTTGGACCGACACGTGCTGGTGCACACCGGCGAACGACCATTTAATTGCAAATATTGTCACCTCACCTTCACCACAAATGGCAACATGCACCGCCACATGCGCACGCACAAACAGCATCAGCACAATCATCATCGGCGGAGCTCGAATGGAACAAAGCATAGCAAcgctaacaacaacaacaacaacaacaacaaccagctGCCTGTAAACACCACTAGCCCGACTGATGGTGATGGCAGCCCAAACGCCGCTTTAACTGCCTTGGCCGCGGCTAATAAGCAATTAAGTCATGACTTTTCTGGCGAAGCTGTTAAATCATCAGTCACGGCAGCTGtgccagcagcagcagcagcagcagcatcgAGTGCCGCCACAATGGAGGCAATTATAGCAGATGTTGCTACTATGGGCGCCGCGATGATGTCAGATGGGGGCGCAGGTGTTAATGGTAAACGCTTACACAGCAGCGGCGTAGAAAGTTTTGAAAGTGATGGTGGTTGCTCAACGGATTCCTCGACAAGCGCCATCAGCCATAGCTCAAATAATAATcgtaataataaaaataacgaCATAACTGACAACATAAACAATAATAACACTAACAattgtaataataataacaacaacaacaacgtcacCGATAGCAACGGCAATGACAACACGACGAGCACAAAACAcaataatttaaataattttaagcGCAAAAGTTGCGATGAAACAGTTCCAGCAGTTGATGCGGCGATGTTGGCAGTGAAGAGACGCATGAAAAagacaactacaacaacaataaacaaCAACAGTATAATTGGCGAAGCAGAATCGCTGCAAGTTGAAATGCAAGATGGCAATGGGCTCGCAGTGTCGTCGTcgtcggcggcggcggcggcggcccCAGTGTCCGAAGATGAAGAGGCTGAAGAGAAACCGCCCACATTTGCCTGTCCCATTTGTCCCGTCTGTAATGCGGACGATTTTGTGGATATGCGTGCGCTCGATTATCATCTCGATACCGAACATGCCGATATAGCAGCCAAGTGTCGACACTGTGCAGTCGTATTCCGTACACACCGCCAGCTGAGTCTGCATCCGTGCACACAAGGCACTGCCAGCAGCGGTCATATGCCGTTGGTGCAATGTGTGAAATGTGGACTTAGTTTTGGCGATAGTAAAGCTTTGGAAATGCATGCACGCGAATGTGAGTCCATGCAAACACGAACTGTACGCCGTAATAGCAGCTTGAGCGATAGCTATGCGGCGTCGCAACACACAGAAGAGGCCGCCGAAGCTGAGGACGATAAAATGACACGCGAAGTACGCAATCAATTTTTCCGACAGCTCTACTTGCAAAGTCAGAAAACCCTTGGCGCACAAAATATGATCTCACCGCAGCTTCCTCAGCCAGCTATGGAACGTCAAGAGGAGGATGAGGAGAGGTGTGAAGTGGTAAGGGAGGCAGAAGAGGGCGATAGAGAGGCGCGCAACGCATGCAGTGCTGGTATTAAACAGGAAACAGATATTGACCAGACTGCAGAGCAAATGGCGCAACAATCGCACGATTCAAAGGACTTCGCCGACATACAATCCATACTGAATATGACCTCATCTTCATCCACATCGAATTTTCTCAAAAACTTCGAACAATCGGTCAACACACCATCGAGCAATTACAGCTTCGATAGAGATGAGGAGGAGGCGCAAGACGCGTTCACATCGGAATTTCGTAAAATGAAATTGCGCGGTGAGTTCCCTTGCAAACTCTGCGCATCCGTCTTTCCCAACTTGCGGGCGCTGAAAGGCCATAATCGCGTACACTTGAGCGCCGTCGGTCCAGCCGGCCCATTCCGCTGCAATATGTGCCCGTATTCCATATGCGACAAGGCGGCATTGGTGCGCCATATGCGCACACACAACGGCGATCGTCCGTACGAATGCGCCGAATGTAATTATGCTTTCACCACGAAAGCCAATTGCGAACGACATCTGCGCAATCGGCATGCGAAGACGACACGCGATGAGGTGAAACGTGCCATCATCTATCATCCGTCCGAGGATTCAACGTGCGATGATGCAACTAAAAAGCTGCATTTGTTTTCCTCGCCGGACTTCGATGACGATATAGATCTGCCGTATCAACAACATCAGCCAAAAGATCGTTCCACACCTGTATCACATCTCAAGGAAATGCTAACCGCAACAGAAAGTCCCACTTCAAAACCGATAAAGATACAAGTGAAGAGTTTGGAGAAGTTGTTGGATAAATCTGGCGGTTCGATTGGCAGTGGCTATAAGGAGCCATACGAAGAACGTCTTGCCGTTGCGCCAGTACCACCAGGCGTACAACAACCGGCAGATATCGCTCCCATCGATTTGAGTATGGACGTATTGGATTTGAGCAAGAAGCCTACAGCAAAATCTTTCGAAAAGGAATTCATGCCCGTCGCGGCAACAACAGCACCAGCGCCAGGGTTAGTCCCAAATCAGCATACCGATAACATTTTGGACGCAGAGAATAAACAAATGGATATATTTTCTTATGTAAAGGAAAATCTCAATATGCCGAAAATGTTAGAGCTTTGGAGCTTATCCGCACAAATCCCTTTCATGCCCGATTTCCGTCCACTCATGAATCAGATGTTTGCCAACTCTGCTGCAGCTGCCGCAGCCGCCGCTGCTGCTTCTAATCCATTTGTGCCGCCCAATATGGACATGACGAAGGCGAATCTATCACCGCCAACCAACATGCCGCCTTCCTTGTTGCCCCACTTGAACTCACTGATGGCCGATAAGTTGAATACGCCACCAGATCCGAAACTAAGGGGCCAAATGCTATCAAACTCTCTGATGACACCGCCAAGTCCGAATGCGAACACATCGCCTAACACGCCTACGTCGATGAATATGCCGCCACGTCACTCGCCGCACATGACGCCTACAATACTGCCCGGCGGGCCTGTCAAAATGGTCATCAAAAATGGTGTGCTCATGCCGAAACAGAAGCAACGTCGTTATCGCACCGAGCGCCCATTCGCTTGTGATCACTGTTCGGCTCGCTTTACGCTCCGTTCGAATATGGAACGTCATGTCAAGCAACAACATCCGCAATACTATGCGCAGCGTAATCGTGGCGGACATCACAGCATGCGGGGACGTGGTGCGTCCGGATCAATAACCATAAATAGCCTTTCGCATTTACAAGAAGCATTCGCTAAGGCGCACAATCAAGTCACGGGTCATCCGCATGCTCAATCTAATGGTGGGTTACCGGGCTCGCCGATATCCGAGCAGGTGAAGTACGCGATATTGGCGCAACAGTTGAAGGCTCGCAAAGATACCGACTTGCTGCAGCAAGCGTTGGCGCATGGCTCTAGCAGCATAACGGCAAATAATCATCATTTGCTTATGAATGCGGCCGGCGGATTTGGGCCAATGGGCGGACCGTCATCAAATGGTCTGCAATTTCCCTTCAACCAGATGACGCAGTCGACAAATATGAATGGCGCCATGGAAGATGATGAGCCCAAATTGATTATTGACGAGGACGAAGaaggtgatgatgatgatgacgatgacgataTCGAAGAGATAATCGACGATAACGAAGACGAACTtgaggaagaagaagtagaagtaCAGATTTTAAGTGAGAACGTTGGAGGCATGCGCGCACCACAACTGCCGATCATCGAACCGGTTCGTGAGGAGGTAAAGAAAGCGCCAACCTCTACCACAGGTGAGTCGGTCAACGAGACAGCCAAAAAGGTTGCCGAAACCATATTGGAACAAGCAATCAAAAGTGGACAGAAACTATCACAGACAATTGCCGCCAAAACCAGTGCAGTGCCATTTGCAGCAAAACCTTTGCCACCGAAGCCCATTGTGCCATGCGCTCCAGTGAAACCTTCTGCACCTGCAGCACCCTCAACGCCTGCTGCACCTATCACTCCAGCCAACACAATGAAAGCCATGATTGCACAAGCCGAATCGGTGGGTAAGTTCCTTAAAGAGGTCGCCAGCTCGCCGTTCAAAGACGAATCTCAAGATTTGGTACCCGTCGCAAAATTAGTCGATAACGCGACCAACAATACCGTcacattcaacaactatttccgtCCCAGTGATGTGGCCAATCACACGGAACAAAGCGACGAGGAGGGCTTGGTCGCCTCAGGCAGTGCCAGCGAAAGCAACAACTCCGGCACCGAGGATGCAGCTACACCAGTGGAACCGAAAAAGAAGTCGGCCTACAGTTTAGCACCGAATCGTGTTTCGTGTCCCTACTGCCAACGCATGTTCCCCTGGTCGAGTTCGCTGCGTCGCCACATACTCACCCACACCGGTCAAAAGCCATTCAAATGTTCACACTGTCCGCTACTCTTCACCACTAAGAGCAATTGCGATCGTCATTTGTTGCGCAAGCACGGCGATGTGGAATCAGCTGTGTCCGTGTATGTGCCAACCGAAGATGTCAACGAGCCAATACCGGTGCCAAAATCCGTGGAAGAGATCGAACAGCAGCAACGTGAGCGTGAAGCGGAAGAGCGTAAACGCAAAGCCGAAGAAGCGCGATTGGAGCGTGAACGGCGTGAGACGCAGGAGCGGTTGCAGCAGGAACAGGAACAACAATCTAAACTTTTCCAGCAGCTACAGCAACAACTCAGTGCTACCATGAACCCAACAAGCAATCCATTAGGCCAGGCAGAGGCTGATGCGCGCACTAAAGACAGCCTTTCACAGCTCAATGCCGATTTGCCGTACAAGTGCCATTTGTGCGAGAGCTCCTTCGGTGAGCGCTTCGTATGCTTGGAGCATATCAAGGTGCAGCATTTGCCCGAATTTACGCTACTGCTATCGAAGGGTGCCATCGTCAGCGATGCCGAGGCCAATCAGACACAGCTGATCGAAGACGAGGAGAGACGCATTAGCGAAGAGGCGGCAAACGTTTACCCGCTACTGCCCAAATTGCCGGCGTACACAAACCGTAAGGTGATTTGCGCTTTTTGTGTGCGGCGTTTCTGGTCCACCGAAGATTTGCGTCGCCATATGCGAACCCATTCGGGTGAGCGGCCCTTTCAATGTGAAATCTGTTTGCGTAAATTTACGTTAAAGCACAGCATGTTGCGCCACATGAAGAAGCACACGAATCGAGGACCAAATGGAGCGCTGGAGGGTGGCGATGGCGCCGGAATGGGTAATAGTGGCTCGGATTTCTCGGATGATGAACAAACACTGACATCCCATACAGCCGCATCGACAAACTTcagcacaacaacagcaacgaccACCGCACAAGCCGTGACAGCAACGCCAATGCCGACAAACACAATTGCAACCCTGGCCGCCTTACGTACGCCCAAAATTCAAGAACTATTGAGCAAAGCAAATGAATGGCGTAGCAGTCATTTGATTGGTAAACAACAAAAGGAGAATATTGCCGAAGAGCAGCAACCGAATGGCGTGCATAGTGATCTTATTGGAAATTTGCTGGGCATCAGCGATCAGGGTATTCTAAATAAGCTGTTGTCTTCCGCAGATGAAGCGGCGAAACTCTTGGGCGTTGAGAAATAA
Protein Sequence: MLATAAASTQPSTLDAIQTNIVTTEMERRDSSTSESSLEHLDLGRTPKKLSSHSSATSTPHTTAIIHSSHSHSNNTNKTNNNTFNNNVIKNEDCISRASAANAAPLPMNEGEQQNGTISNRSQRQHESDETNDYDDDEEESTDEQRSKQNSMSARAQRHHKRRSTHQPRLDKRTSVHLELNADDPNSLRKKFCFNRNTSASEQLTNNESGFVDTSSSSSHYLNASVVSLVAATAAASTAVTAATASSTPPSALAAEAVATTLPLASLPAAISRSASLSAAGSHCSSSAASSPRGCGTASSVSVSSPESGIGDRDREDMKFVCTICDVVSATRHEFTNHIRCHNYASGDTENYTCAICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHNHHRRSSNGTKHSNANNNNNNNNNQLPVNTTSPTDGDGSPNAALTALAAANKQLSHDFSGEAVKSSVTAAVPAAAAAAASSAATMEAIIADVATMGAAMMSDGGAGVNGKRLHSSGVESFESDGGCSTDSSTSAISHSSNNNRNNKNNDITDNINNNNTNNCNNNNNNNNVTDSNGNDNTTSTKHNNLNNFKRKSCDETVPAVDAAMLAVKRRMKKTTTTTINNNSIIGEAESLQVEMQDGNGLAVSSSSAAAAAAPVSEDEEAEEKPPTFACPICPVCNADDFVDMRALDYHLDTEHADIAAKCRHCAVVFRTHRQLSLHPCTQGTASSGHMPLVQCVKCGLSFGDSKALEMHARECESMQTRTVRRNSSLSDSYAASQHTEEAAEAEDDKMTREVRNQFFRQLYLQSQKTLGAQNMISPQLPQPAMERQEEDEERCEVVREAEEGDREARNACSAGIKQETDIDQTAEQMAQQSHDSKDFADIQSILNMTSSSSTSNFLKNFEQSVNTPSSNYSFDRDEEEAQDAFTSEFRKMKLRGEFPCKLCASVFPNLRALKGHNRVHLSAVGPAGPFRCNMCPYSICDKAALVRHMRTHNGDRPYECAECNYAFTTKANCERHLRNRHAKTTRDEVKRAIIYHPSEDSTCDDATKKLHLFSSPDFDDDIDLPYQQHQPKDRSTPVSHLKEMLTATESPTSKPIKIQVKSLEKLLDKSGGSIGSGYKEPYEERLAVAPVPPGVQQPADIAPIDLSMDVLDLSKKPTAKSFEKEFMPVAATTAPAPGLVPNQHTDNILDAENKQMDIFSYVKENLNMPKMLELWSLSAQIPFMPDFRPLMNQMFANSAAAAAAAAAASNPFVPPNMDMTKANLSPPTNMPPSLLPHLNSLMADKLNTPPDPKLRGQMLSNSLMTPPSPNANTSPNTPTSMNMPPRHSPHMTPTILPGGPVKMVIKNGVLMPKQKQRRYRTERPFACDHCSARFTLRSNMERHVKQQHPQYYAQRNRGGHHSMRGRGASGSITINSLSHLQEAFAKAHNQVTGHPHAQSNGGLPGSPISEQVKYAILAQQLKARKDTDLLQQALAHGSSSITANNHHLLMNAAGGFGPMGGPSSNGLQFPFNQMTQSTNMNGAMEDDEPKLIIDEDEEGDDDDDDDDIEEIIDDNEDELEEEEVEVQILSENVGGMRAPQLPIIEPVREEVKKAPTSTTGESVNETAKKVAETILEQAIKSGQKLSQTIAAKTSAVPFAAKPLPPKPIVPCAPVKPSAPAAPSTPAAPITPANTMKAMIAQAESVGKFLKEVASSPFKDESQDLVPVAKLVDNATNNTVTFNNYFRPSDVANHTEQSDEEGLVASGSASESNNSGTEDAATPVEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGDVESAVSVYVPTEDVNEPIPVPKSVEEIEQQQREREAEERKRKAEEARLERERRETQERLQQEQEQQSKLFQQLQQQLSATMNPTSNPLGQAEADARTKDSLSQLNADLPYKCHLCESSFGERFVCLEHIKVQHLPEFTLLLSKGAIVSDAEANQTQLIEDEERRISEEAANVYPLLPKLPAYTNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHTNRGPNGALEGGDGAGMGNSGSDFSDDEQTLTSHTAASTNFSTTTATTTAQAVTATPMPTNTIATLAALRTPKIQELLSKANEWRSSHLIGKQQKENIAEEQQPNGVHSDLIGNLLGISDQGILNKLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -