Ucar017174.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482671.1:159026933-159034285[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.7e-06 0.001 20.7 3.7 1 23 399 421 399 421 0.98 2 9 1.2e-06 0.00017 23.2 0.9 1 23 427 449 427 449 0.98 3 9 0.0016 0.21 13.4 4.5 1 23 455 477 455 477 0.98 4 9 1.6e-05 0.0021 19.8 0.4 1 23 483 506 483 506 0.97 5 9 7.2e-05 0.0095 17.7 0.5 2 23 519 540 518 540 0.97 6 9 0.00071 0.094 14.5 5.8 1 23 620 642 620 642 0.98 7 9 0.0053 0.7 11.8 0.3 2 23 653 675 652 675 0.95 8 9 4.2 5.6e+02 2.7 0.2 1 23 682 705 682 705 0.88 9 9 0.097 13 7.8 1.5 1 23 707 731 707 731 0.94
Sequence Information
- Coding Sequence
- aTGAATTTTCGCGTTAATATAAATGTTTGTCGTGTTTGTATGAAAGCAGAATCTGGCGTATCACTTCACGATGACAGCGTTTTGAATCAAAAGTTTGTTTTTACAACGCGCCTGAAGATTACCAAGTCCGACGATGTGCCCTCGTTGATTTGCTATAATTGTCAGAAGCGCCTTCGAATATCGTACGATTTCGTAAAATTGGCACATGAATCGGATAAAAATTTAAGAGATTTTTTAATCAAGATCAGTAAGGATTTTCAATTGGTGGCAAGTAATGTTTCAAACAAAGATAGAAATAACGAAGGTGACGAAGATGACGATGATTTATTATCAACGATTGCTGTTGAGGACGATGATAGTTTGGATAAGACCGCAAATGCAACAGACACGAATACCGAAACACAGATCGTGACAAAAAAGGTCGTTATGGAGGTCAAATCTCCACCTAATAAAAACACTACAGAGAGGAGTTTCTGTGAAATTCAAGACAGTACACTTCCAGAGCAAGAAATGCCAAAAGATTCAGATCGCACTATTATGGATATGGAAAAAGTAGACACAAAAGAAAGTGGCAGTAAATTATTAAAAGCTAATGTTAAGATAGAGAAGGAAATTGCTGGCCAAGGCTCAGAAGAGTACAATTTACTTGAACCCGATTTGCAGGCAGACATACGAGAGGAAGAAACAAAAGAAATTGTCTTACAATCCAATAACAAGGATGATACGAATTCGGAAACACATAATGACCAAATACCAAATGGGGAAATGCAGATTCTGGAATACACTGATGAAGATTCACAAACCGAATTGGAAATTTTAGAAGAAAGGGATGGTTATCTAAAAGAATACCAAGCGATTCTCGAAGAAGACGTCGAAGACGAATACATCGAAGATGCTAATGTGATATCCAACAACACAACTGGCGATGAAATTGTCATATACGAATCGAAAGAGGATTTATTGGATGATACAGATCACAAAATGGGAGTACGAGAAGAACAGCCGAACAGTGCTGAAGAACATGATGGCATTGAGATAAAACCCCAATCCCGATTTGTAGTCGAAAATGTGGAGAATGCAAGAGAAGCCAAAAGAAAAGTTAGAAAAGGCCCAACTAAAACGAATACTCGTGCAGGCGGTACCACCGCAAAGTCAACTGGGAAAGATGATTGCAGCACTAGTAGTGAGAGACGCTACTTCTGTTACAAATGTAATCGTGACTTTAGCACCAAAACTAACTTAACACGTCATCTGTTAACACATGAGGGAAAACGGCCCTTTCAGTGTAATGTGTGCAGTAAGGGTTTCACGCAGAATGCCTCACTAAAACAGCATATGTATATTCACACGGGCGAAAAGCCATACCAATGCGAGATCTGTGAGAGAAGTTTTACACAATGCAAAAGTCTTGTGTTCCACCGTCGTAGACATTCTGGCAATAAACCTTTTCCGTGTGAAGAATGTGGTACGCTGTTCCGACAAAAAGATGGACTTAAGACACATATTCTCAAAAGACATACAATTAAATCACAACAAGGAAATACTGAACTCATTACTTGCACAATTTGCAAGGAAAAGCTTCCTGATAATAGCTCACTCCAGGATCATATGAAAAAACATTTAAGCGATTATGTTCGTGTCGACTCGGCAATGTCATATTCAAATCGCGAAGCACACTCTACAGATGAAAAGAATGAACTGATGATGGATTATGATTACAATGACGATCAATACCACAACAAAGAGCCAGTGTATTTTAGCGAAACAGTTACAGATGGAACCGATATTATTAATGAAGCTGCGCATGTCGTGGATATAATGACAACATCGGCTATGGAACCGAGTCGTGCAAAGAAATTCCAATGCCGCAAATGTTTCAAATGCTTTGCTATTAAGAAGAATCTTTTACGCCACTTGACCACTCACGACATCAATGTGGCGACGACGGAGGACCTTTACTGTAAATTATGCGACCTCCGATTTGTTAATGATGAGGGATTACAGTCGCATACCTTGAGAGAACACAACAGCTTCGGTGAAATGCATCAATGTGAATTATGTCAATTACTTCTTCCCAGTGCAGTGGAAATGCAGAAGCACAGCCTTTTGGAACATTCGTTTAAATGCCAGTTATGCACCAATATACAATTCACATCACAACGCCAGCTTACAAATCACAATATGATGGAGCATGAATTAAACAAGATCTATTAG
- Protein Sequence
- MNFRVNINVCRVCMKAESGVSLHDDSVLNQKFVFTTRLKITKSDDVPSLICYNCQKRLRISYDFVKLAHESDKNLRDFLIKISKDFQLVASNVSNKDRNNEGDEDDDDLLSTIAVEDDDSLDKTANATDTNTETQIVTKKVVMEVKSPPNKNTTERSFCEIQDSTLPEQEMPKDSDRTIMDMEKVDTKESGSKLLKANVKIEKEIAGQGSEEYNLLEPDLQADIREEETKEIVLQSNNKDDTNSETHNDQIPNGEMQILEYTDEDSQTELEILEERDGYLKEYQAILEEDVEDEYIEDANVISNNTTGDEIVIYESKEDLLDDTDHKMGVREEQPNSAEEHDGIEIKPQSRFVVENVENAREAKRKVRKGPTKTNTRAGGTTAKSTGKDDCSTSSERRYFCYKCNRDFSTKTNLTRHLLTHEGKRPFQCNVCSKGFTQNASLKQHMYIHTGEKPYQCEICERSFTQCKSLVFHRRRHSGNKPFPCEECGTLFRQKDGLKTHILKRHTIKSQQGNTELITCTICKEKLPDNSSLQDHMKKHLSDYVRVDSAMSYSNREAHSTDEKNELMMDYDYNDDQYHNKEPVYFSETVTDGTDIINEAAHVVDIMTTSAMEPSRAKKFQCRKCFKCFAIKKNLLRHLTTHDINVATTEDLYCKLCDLRFVNDEGLQSHTLREHNSFGEMHQCELCQLLLPSAVEMQKHSLLEHSFKCQLCTNIQFTSQRQLTNHNMMEHELNKIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -