Ucar008454.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482670.1:152288751-152292452[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.77 1e+02 5.0 0.5 2 19 76 93 75 98 0.92 2 17 0.31 41 6.2 3.2 2 19 143 160 143 163 0.93 3 17 0.16 21 7.1 0.1 3 23 205 226 204 226 0.94 4 17 0.059 7.9 8.5 0.1 2 15 233 246 232 248 0.85 5 17 0.0066 0.87 11.5 4.1 1 23 260 283 260 283 0.92 6 17 0.0096 1.3 11.0 1.4 1 23 288 310 288 310 0.96 7 17 0.11 15 7.6 0.2 1 20 319 338 319 339 0.96 8 17 0.0012 0.15 13.9 2.6 1 23 359 383 359 383 0.93 9 17 0.36 47 6.0 0.7 3 23 390 410 388 410 0.96 10 17 0.051 6.8 8.7 6.5 3 22 457 476 455 479 0.88 11 17 0.0035 0.47 12.3 0.6 1 23 483 506 483 506 0.96 12 17 9.3e-05 0.012 17.3 0.3 2 23 512 534 511 534 0.94 13 17 0.0018 0.24 13.3 0.1 2 23 538 560 537 560 0.95 14 17 0.097 13 7.8 1.1 1 20 566 585 566 587 0.90 15 17 0.0088 1.2 11.1 0.3 1 23 594 616 594 616 0.98 16 17 5.3e-05 0.0071 18.1 0.9 2 23 623 644 622 644 0.97 17 17 0.076 10 8.1 0.1 1 23 650 678 650 678 0.86
Sequence Information
- Coding Sequence
- ATGTATGAAAACACAGATGATGAAAACGCTGAATTCTTGGAAGAAGCTGGAGAAAATGAAAGCAACGATGAAATATTGCCAAACTTTCCTTTTCACAATCTCAAAGATGATCCTGATTTGCAACATGCTTTCATGCCGAATGATGACGAGGAAGCCGATATTAATGAACATTTGGATCGCGCTATAGCAAGTAATTTGGAAACACTGGATTTTAAATGGCAAAGTGAATGCTTGATTTGTTCGGAAAACTTTGAAGACTATCAGGATTTACTGCAACACTGCATAGAATTGCATAGCAATGACGATGATGGAAATGAATATGCATGCATATTTGAAGATTGTGAGCTTGTTTTATCAAGTGAACCTTTGCTTGCCAGACATCTGGTGCTGCGGCACAGTGACTTAGAAAGAATAAAAATCTATGCCAGCTGTCCCTACTGTGGATATCGTTCGTcgaattttaataaattcaataaaCATTCCTGTTACAGCAAGCTTTCGCGCAAAGCATGCACGCAGCCTTATTGCCAGTATTGCAAAGAAGAATTTGTTTCACATAAAAGGTTTCTTTTTCACTTACAATTTCATCTGGTGAAGCGGCGTGCTAAGATTTGTTTGATTTGCAACGAAAATTTTAATGATGTGAATGAGTTTTTCATGCATGTGAATTATGCGCATGAGTCACCAGAGAAGCTGCCATGTACGATTTGTGATCGCGTATTCACGAATCTAGAAGCATTCAGTTTGGATCAAGAATTGCATGGATTGCCTGACGTATACAAGTGTGATGAATGCAGCAAAACTTTTCGTCATAAAAGAATATTAATGCAGCATAAGGAAAACAGGCATTCCAATGTTGAATATGCCTGTGATCTTTGTCCAAAAATATTTCCTTCCTTCTCCATGCTGCAATGTCATCTGAAATATCATGATCCGGATGCGGAAGTGCAAGTGTACACTTGTGCGAATTGCGGCTTGATTGGGCGCGATTGTAAGAGTTTGGAGACACACATTGACGATCCATCTAGAGAATGTTTTGATAGCGCAATTAACAAAGAAATACTCGTAACAGCTTACAGTTGCCATTTCTGTGCACAGGATTTTAAGGATAAAGACGCGCTACAAAACCATCATAACACTGGTGTGCATGAAGATGGAAAAATGCATTGTCCGATATGTATGGAGGCTTTCAATGAGCTAAAAATGCGGCGCATACATATGCTGACGCATACAAACTATACAAATTGGTTGAAAAGCTGTCCACTGCGCAGACTATACTTGTGTGATGAGGACaATTGCGAAGTTGTTTGTCAATGTCGCGCAGCATTGCAGCGTCATAAAAAGCGTTTtcacaaaacacaaaaatgcTGCCGCAAATGTGATCAGAAATTTGAAAATACCGCTGAACTGCAAAATCACATGAAGCAATGTCGTCACACTAATGCATTTCAATGTCAAATTTGTGCTAAAATGTGTCCAACAAAAATGTCCTTAGCGGTGCATGTGGCGCGTAGGCATtatgtggCTCAAATCTCATGTCCACATTGTCCGTACGCATACAAGAACGAAGAGGCTTTGCGTAAACACATAGAATATTCGCATGTACCTGTGCCGTGTACGCAATGCGATAAAGTTATAGGTAATAGACGTTACTTGGCCACGCATATGCGCGCAGTACACGAGAGTGAATGTCGTTATTTTTGCGCATACTGTGACAAGGGTTTCTTTTATCGTTCGCAGAAGGTTAATCACGAGCAGAATTGTCAACCCGATACACTTTACAAATGTGGCGAATGCGATTTCCAAACGAAATACGCCAATTCGCTTGAGCTGCATGTCGCCAAACATTTACAAAAGTTGCAGCTAAAATGTCCATATTGTGCGAGAATGTTTGCGCGTAAAAATACGCTTACTCTGCATGTAAAACGGCATGAGAATGATAAACCCTTTAGATGTTGGGATGTGCTTGTTGATGGCTGTGAGGCTGCTTATGTAACACGCTATTTCCTAAATCAACACATTAAAAGTAAACATGCCGCGCAGTCGTGTAAAATTGAAAAACAAAGTAGAATTGCAAACAAGAAAGAAAGGAATGAAGACGAAAAGCGAATTTTTCCCAAACAATGTAAAAGACAAAATACTAAAGCAACTAACTGCTCGTCCAGCTCAACCAGCTCCTCCTCAACCACAGCTACCTTCTCCTCCAACTCAGCTACCTCTGCCTCCTCCAACTCAGCTACCGCCACTAAGCGCGATTTGTTTGTGCTTGAGTCAGTAGACCGCGATCAAGTCGCTGAAACTGCGGAAATAAATGGTACAACTGCTGCCATTGCTACTGCTTCAGCATTTATGATGGGCGAAGAAGTATTTATCGCTGTCGATGATATAAAAAGTGAAACGGATGAAAACTGTCTGATGATGCTGGTGGATGACAACACACACCAGCAAATACTTAATAATGCGCAAGGACAACTTTTGTTGCTGGAAAACACTGAAATGATTACAAGCTGA
- Protein Sequence
- MYENTDDENAEFLEEAGENESNDEILPNFPFHNLKDDPDLQHAFMPNDDEEADINEHLDRAIASNLETLDFKWQSECLICSENFEDYQDLLQHCIELHSNDDDGNEYACIFEDCELVLSSEPLLARHLVLRHSDLERIKIYASCPYCGYRSSNFNKFNKHSCYSKLSRKACTQPYCQYCKEEFVSHKRFLFHLQFHLVKRRAKICLICNENFNDVNEFFMHVNYAHESPEKLPCTICDRVFTNLEAFSLDQELHGLPDVYKCDECSKTFRHKRILMQHKENRHSNVEYACDLCPKIFPSFSMLQCHLKYHDPDAEVQVYTCANCGLIGRDCKSLETHIDDPSRECFDSAINKEILVTAYSCHFCAQDFKDKDALQNHHNTGVHEDGKMHCPICMEAFNELKMRRIHMLTHTNYTNWLKSCPLRRLYLCDEDNCEVVCQCRAALQRHKKRFHKTQKCCRKCDQKFENTAELQNHMKQCRHTNAFQCQICAKMCPTKMSLAVHVARRHYVAQISCPHCPYAYKNEEALRKHIEYSHVPVPCTQCDKVIGNRRYLATHMRAVHESECRYFCAYCDKGFFYRSQKVNHEQNCQPDTLYKCGECDFQTKYANSLELHVAKHLQKLQLKCPYCARMFARKNTLTLHVKRHENDKPFRCWDVLVDGCEAAYVTRYFLNQHIKSKHAAQSCKIEKQSRIANKKERNEDEKRIFPKQCKRQNTKATNCSSSSTSSSSTTATFSSNSATSASSNSATATKRDLFVLESVDRDQVAETAEINGTTAAIATASAFMMGEEVFIAVDDIKSETDENCLMMLVDDNTHQQILNNAQGQLLLLENTEMITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -