Basic Information

Insect: Urophora cardui
Gene Symbol: -
Assembly: GCA_960531455.1
Location: OY482671.1:109445675-109448078[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 14 7.7 0.5 1 20 194 213 194 215 0.94

2 10 0.02 2.7 10.0 0.7 3 23 230 251 229 251 0.94

3 10 0.13 17 7.4 1.0 2 23 256 277 255 277 0.92

4 10 3.9e-05 0.0052 18.5 0.4 1 23 283 305 283 305 0.97

5 10 3e-07 4e-05 25.1 1.0 3 23 317 337 315 337 0.96

6 10 0.06 8 8.5 4.9 1 23 344 366 344 366 0.96

7 10 3.2e-07 4.2e-05 25.1 0.7 2 23 372 393 371 393 0.97

8 10 8.8e-05 0.012 17.4 1.4 1 20 399 418 399 421 0.93

9 10 0.00052 0.069 15.0 0.4 2 23 427 448 426 448 0.93

10 10 1.6e-05 0.0021 19.7 0.7 1 23 453 476 453 476 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	14	7.7	0.5	1	20	194	213	194	215	0.94
2	10	0.02	2.7	10.0	0.7	3	23	230	251	229	251	0.94
3	10	0.13	17	7.4	1.0	2	23	256	277	255	277	0.92
4	10	3.9e-05	0.0052	18.5	0.4	1	23	283	305	283	305	0.97
5	10	3e-07	4e-05	25.1	1.0	3	23	317	337	315	337	0.96
6	10	0.06	8	8.5	4.9	1	23	344	366	344	366	0.96
7	10	3.2e-07	4.2e-05	25.1	0.7	2	23	372	393	371	393	0.97
8	10	8.8e-05	0.012	17.4	1.4	1	20	399	418	399	421	0.93
9	10	0.00052	0.069	15.0	0.4	2	23	427	448	426	448	0.93
10	10	1.6e-05	0.0021	19.7	0.7	1	23	453	476	453	476	0.98

Sequence Information

Coding Sequence: atggACTGCTTTCGAATTTGCACACAATTGACAGACGGTAATAACGAAGAGAAAATGCCTCAAAGTCTTTGTGAAGAGTGTGGTTTGGAATTGAAAATCGCGTGGAACTTTCAGCAAAAAGCTAAACAATCCGATGGAATATTAAGACAGGCTGCTGCTGGTGATAGCACAAATAATGGAGAACAAATAAATGACCACCAAGCGAGTTCAATAGAGATGAGGAATTGTGGTTTAAATGAATTTAAAAATGAAGAGCCCGAAATGTTGATAATTAAAGGTGAAGTGGCTGAAGTTGTTGAGAGTAACAAAGAGGATATAATAATATCATCAGGAAAATATGAAATTGAAGACTCCCTAAATGAaacgcaacaacaaaaacaagaagAACGAACTGAAGAAAcaattatttgtacaaatttgtCAACAGATTTGGAATATTACGTGATAGAGAAATGGGAAGAGGCTGATACAGATGATGGAAAAGGCGTTCCAGAAAGGTTTGAATACGAAACTGCGGACAACAGCCCAGATGAAAAAAATGTGGCAGGCTTGACACAGGaaattgCAACGACCGCAACATACTCCTGTTCTAATTGCTTTCAATTATTCGAAACTAACTATGCATTATCACTTCACACCTTACAATGTCGAACGACGATAAATGAGCAAAAGGAAAAGTTAAATATCTGCCATATTTGTGATCAAACTATCACTAAAGGCGTAACGCTGCGTAAACATTTGAAAGACGCACATTCGAATGttataaaatgcaatgaatgTGATTATAGTTGCCCGGCATACCAAATGTCTAAACATATTGAAAATTCTCACGGCGAATTAGGAAGTTTTGCTTGCAACTTGTGTGATAAAATATTGGTTAGCCAAAGCTTATTGAAAACCCATATAAAGTATCATCAACGCAAAGAGGCGAATATAAAATCGGATGCATGTGAAATTTGTGGAAAACGTTTTTCAACACAACATTACCTACGCCAACATATGGACGTTCATCGGAAAGAACGTCAGCTACATCATTGTGATCATTGCGATAAAATTTATGTGAGCAAAATTGCATTCGATAATCATAGTCGACTTCATAAAGGTGAAACGATTAAGTGTGAGCAGTGTGGCAAGCAATTCGTACGGCAATATGAATTAAATGTACATATGCGTTTCCACAGACGTGATTATCCATTCAATTGTGATATTTGTGATAAGAAATTTGCTATAAAAGGCCACTTACGCACGCACATGTGGCGACACCAAGGACTGAAGCTGCAATGTGAAGAATGCGGAAAGCTGTTTACGTCAACAAAAGCATTGCAAGAGCACTCTTTTGTACACAGCGAAATGCCATATCCATGCACTTATTGTGGACGAGGATATCCAtcaaagcaaaaGTTTAAAGTGCATCTAAAAACAGCGCATCTTGTAGAAGTAACAGAAGATGAGATtttgaaaattacaaaaataaaaagtccCAAACCGCTACAAAGAAAAAAACTGACTCTAGTACAAGCGGATAGTGTTATGAAAGAGATCGAAGTGAAGGATGGTGAAGAGGAAATTGGAAATGAAAGCGAACTATCCATGGCGCTTTGTTAG
Protein Sequence: MDCFRICTQLTDGNNEEKMPQSLCEECGLELKIAWNFQQKAKQSDGILRQAAAGDSTNNGEQINDHQASSIEMRNCGLNEFKNEEPEMLIIKGEVAEVVESNKEDIIISSGKYEIEDSLNETQQQKQEERTEETIICTNLSTDLEYYVIEKWEEADTDDGKGVPERFEYETADNSPDEKNVAGLTQEIATTATYSCSNCFQLFETNYALSLHTLQCRTTINEQKEKLNICHICDQTITKGVTLRKHLKDAHSNVIKCNECDYSCPAYQMSKHIENSHGELGSFACNLCDKILVSQSLLKTHIKYHQRKEANIKSDACEICGKRFSTQHYLRQHMDVHRKERQLHHCDHCDKIYVSKIAFDNHSRLHKGETIKCEQCGKQFVRQYELNVHMRFHRRDYPFNCDICDKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFVHSEMPYPCTYCGRGYPSKQKFKVHLKTAHLVEVTEDEILKITKIKSPKPLQRKKLTLVQADSVMKEIEVKDGEEEIGNESELSMALC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -