Basic Information

Insect: Urophora cardui
Gene Symbol: -
Assembly: GCA_960531455.1
Location: OY482671.1:27651148-27653324[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00018 0.024 16.4 4.8 1 23 260 282 260 282 0.98

2 9 0.0014 0.19 13.6 1.9 1 23 297 319 297 319 0.96

3 9 1.4e-06 0.00018 23.1 0.8 1 23 330 352 330 352 0.98

4 9 4.5e-07 6e-05 24.6 0.1 1 23 358 380 358 380 0.96

5 9 0.00081 0.11 14.3 0.2 1 23 386 408 386 408 0.96

6 9 0.00053 0.07 14.9 1.8 1 23 414 436 414 436 0.95

7 9 4.7e-05 0.0062 18.3 1.1 1 23 442 464 442 464 0.99

8 9 8.5e-05 0.011 17.4 2.8 1 23 470 492 470 492 0.99

9 9 0.00079 0.1 14.4 0.8 1 23 498 520 498 520 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00018	0.024	16.4	4.8	1	23	260	282	260	282	0.98
2	9	0.0014	0.19	13.6	1.9	1	23	297	319	297	319	0.96
3	9	1.4e-06	0.00018	23.1	0.8	1	23	330	352	330	352	0.98
4	9	4.5e-07	6e-05	24.6	0.1	1	23	358	380	358	380	0.96
5	9	0.00081	0.11	14.3	0.2	1	23	386	408	386	408	0.96
6	9	0.00053	0.07	14.9	1.8	1	23	414	436	414	436	0.95
7	9	4.7e-05	0.0062	18.3	1.1	1	23	442	464	442	464	0.99
8	9	8.5e-05	0.011	17.4	2.8	1	23	470	492	470	492	0.99
9	9	0.00079	0.1	14.4	0.8	1	23	498	520	498	520	0.98

Sequence Information

Coding Sequence: ATGGACATGAGTTTGAAATATTTGGAAAACCTCTGCCGTACTTGTATGCATGTGGTGACTGAGGATGAGAAGGCAGACACCACCGCAAAAACAGCAGAGCAAAAATGGCAATTCATATTTAACACCGTTGCAGCGTTTGGAACTATGAGCATCGCAGAATTACTAATTAATACattgccaaaaattaaaatagaagaGAATGACATGCTACCGAATAAGATTTGTTGTGATTGCCTGGGGCAATTGATAAATTCATATCGTTTCCAACAGAAGTGTCTACAATCCGAGCTGCAAATATGCACATTGATATCTGGGAAAGAATTGCAAACTAAAATGCAAACACTACAAGATTCCAAAACAGAAGACCGATTAAATTGCAAAGAATTTATAGTAGAAGAATTATTTTTAGAGACAGAAGAGCAGAGAATTGGGGTGAAGTGCGAGAATCCACTGTCGGAAGTAACACAATCGCAAAACGAAATTGCTGATCCTCTAAAAGAAAGCTTTGACGACCTAGAAAATAAGTACGATAaggatgaagaagaacaagataTTAACGCTAGCGTTTATAACGAATGTGTTAAAAATGAACCACTCGATGTCGAAGATATTGAGACCGCTGTTAATTACAGAAACCATGATGGTACTATCCCCGCAACAGTTGTCAATGTAAAAGATGAAACAattataacaaaagaaaaacaaaacaaaaataagcaTGTGCAACAGACCACAATGATCCAGGACGGGAGGAAGACAACACGAGAGCATTATCAATTTAATTGTGATATTTGTGAACGGCATTTCCGTAAACCAGAATCGCTACATAAACATCGTTTGACGCACAATCATGAAAAGGCGTGTGTCACAGCAATAAAACCCACTAGATATTCTTGTGAAAGTTGTGCAAAGACATTTAGTTCACGTCAAACTTTATGGACACACAAATCGTATCATTGTGGTGGGAAGGCACtgagaaaattaaatttctcatgcgaaatatgcaaaaaaaATTTTAGGTATCCTGCTGCGCTAAAAACTCATCTAAATACACATACTGATGAACGTCCATACTTGTGTACAGAGTGTGGTAAAGCTTTCAGGTCGCCAGGCGCCTTAAAACAACATATTTTACGACATGCTGACGCAAGACCTTTCGAATGCCCTTACTGTCCGAAAAAATTTCCATGCCAAGCCGACCTAGCTATACATAAAGCCATACATGAAAAAGTCAAGCGGCACATTTGTGATATTTGTGGTGCTAGTTTGTGCAGACAATATCAATTGAAGATACATAAAATGGGTCACAGTGGTGAGAAGCCATTTAAATGTGATTACTGTGATATGCGTTTTGTACGCATGGTTGCTACACGTCGTCATATGCTCACGCATACCGGCGAGAAACCCTACAAATGTCAATACTGTGATCGTGCCTTTGCCCAAAGCAATGATCATATCAAACATTTACGTACTCACATAGGTGAGAATGTTTATAGATGTGAGTTTTGCCCACGCGCCTTTCGTTTGGCATCAGAGATGCGCTTGCACTTTACAACGCATAAGCACGACGATGAAGAGACGCGTGAACGTAATATGAAAGCTTTGAAGGAGGCGGAGACTAAATTGCAATTGAAGTTAGCAGGAAAATAA
Protein Sequence: MDMSLKYLENLCRTCMHVVTEDEKADTTAKTAEQKWQFIFNTVAAFGTMSIAELLINTLPKIKIEENDMLPNKICCDCLGQLINSYRFQQKCLQSELQICTLISGKELQTKMQTLQDSKTEDRLNCKEFIVEELFLETEEQRIGVKCENPLSEVTQSQNEIADPLKESFDDLENKYDKDEEEQDINASVYNECVKNEPLDVEDIETAVNYRNHDGTIPATVVNVKDETIITKEKQNKNKHVQQTTMIQDGRKTTREHYQFNCDICERHFRKPESLHKHRLTHNHEKACVTAIKPTRYSCESCAKTFSSRQTLWTHKSYHCGGKALRKLNFSCEICKKNFRYPAALKTHLNTHTDERPYLCTECGKAFRSPGALKQHILRHADARPFECPYCPKKFPCQADLAIHKAIHEKVKRHICDICGASLCRQYQLKIHKMGHSGEKPFKCDYCDMRFVRMVATRRHMLTHTGEKPYKCQYCDRAFAQSNDHIKHLRTHIGENVYRCEFCPRAFRLASEMRLHFTTHKHDDEETRERNMKALKEAETKLQLKLAGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -