Basic Information

Insect: Urophora cardui
Gene Symbol: -
Assembly: GCA_960531455.1
Location: OY482671.1:27451841-27486227[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0057 0.75 11.7 1.6 1 23 239 261 239 261 0.97

2 15 0.00021 0.027 16.2 0.4 1 23 272 295 272 295 0.94

3 15 0.0057 0.75 11.7 1.6 1 23 399 421 399 421 0.97

4 15 0.00048 0.063 15.1 0.4 1 23 431 454 431 454 0.94

5 15 0.016 2.2 10.2 1.0 2 23 610 631 609 631 0.95

6 15 0.00048 0.063 15.1 0.4 1 23 642 665 642 665 0.94

7 15 0.36 47 6.0 2.3 2 23 676 698 675 698 0.90

8 15 0.0035 0.46 12.4 3.4 1 23 731 753 731 753 0.97

9 15 0.25 33 6.5 2.9 1 23 764 791 764 791 0.64

10 15 1e-06 0.00014 23.4 0.7 1 23 797 819 797 819 0.96

11 15 0.0037 0.49 12.3 2.3 2 23 826 847 825 847 0.95

12 15 4.7e-05 0.0062 18.3 2.2 1 23 853 875 853 875 0.95

13 15 0.0011 0.15 13.9 5.4 1 23 881 903 881 903 0.99

14 15 0.0004 0.053 15.3 3.0 1 23 909 931 909 931 0.99

15 15 0.038 5.1 9.1 0.1 3 23 939 959 937 959 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0057	0.75	11.7	1.6	1	23	239	261	239	261	0.97
2	15	0.00021	0.027	16.2	0.4	1	23	272	295	272	295	0.94
3	15	0.0057	0.75	11.7	1.6	1	23	399	421	399	421	0.97
4	15	0.00048	0.063	15.1	0.4	1	23	431	454	431	454	0.94
5	15	0.016	2.2	10.2	1.0	2	23	610	631	609	631	0.95
6	15	0.00048	0.063	15.1	0.4	1	23	642	665	642	665	0.94
7	15	0.36	47	6.0	2.3	2	23	676	698	675	698	0.90
8	15	0.0035	0.46	12.4	3.4	1	23	731	753	731	753	0.97
9	15	0.25	33	6.5	2.9	1	23	764	791	764	791	0.64
10	15	1e-06	0.00014	23.4	0.7	1	23	797	819	797	819	0.96
11	15	0.0037	0.49	12.3	2.3	2	23	826	847	825	847	0.95
12	15	4.7e-05	0.0062	18.3	2.2	1	23	853	875	853	875	0.95
13	15	0.0011	0.15	13.9	5.4	1	23	881	903	881	903	0.99
14	15	0.0004	0.053	15.3	3.0	1	23	909	931	909	931	0.99
15	15	0.038	5.1	9.1	0.1	3	23	939	959	937	959	0.97

Sequence Information

Coding Sequence: ATGGATACAAGATATGAGCGAAATTTAGGAAGGTTTTGTCGAACTTGTATGCATGATGTGACTAAAGCAACTGCAACCACCTCCGAACCAAAGCGACATTGGCAATTCATCTCCGATACGGTTACAGAATTTGGTAAATGGAGCATTGCTGAATTGCTATCAAAAACAATGCCGCAAATAAAAGTGGATTTAAATGACGAACGGATGCCAACAAAAATTTGTGATGAATGTTTGTTACAATTGCGAAACTCATATCGTTTTCAGATGATATGCCTGCGAACCGATCAACAATTGCACGAGCTATTAGCAAAAATCCATTGTGACATCAtagaaaaaaaggaaataagTGAGATAATATTCCCAATGCAAGAAATCCCTTTAAAAACCATAGACCGAGCTAAGATGGCTGATGCTGCGGACCCTCTAGAAAGTACTATTGACGATATAGTGGTAGGCCAAACAGCTGCGGGAGCCGGCAATACCGATGAATTTATTAAAGATGAGCGATGCGGCGATGATGAGCGAGGAATTGAATACGATAGTGACCGAGAAATTTTTCACTCAGCCATCGATATAAAGGATGAAATATTTGAAGCAGAACCAACAGATGAGGAAAAGAGCAACGAAAGCCTAATTCCGAACACACATACCAAGAATTCTGCCGAACAAAATGAAATTGTTGCACAAGCGAAGAAATCAGGTGAAaaatatcgcttcaaatgtgaTTTGTGCAATCGCTATTTTAATAAGGCCGAATCGTTTGACAAACATCGTTTAGCACATATGGAGGGAGTTAAGGAGGGGCTAGACATATATTCTTGTGAGATGTGCGGCAAGACTTATAGTACACGGGCTATATTGAAGCGACATGAGAAAGAAGTACATTTACGGACAAAAAAACGGAAACAGAACCGTTCAAAGCAATATAAATGCATATATCGTGAGAAAATTTTGGAAAGTTCAAATATGTCACCAGAGCATATGCTCACACACACCGCTGAACAAGAGAACTTTTTTGGCACGCATACCAAAAATTCTGTCAAGCAAAACGAAATTATCCAAGTAGAGAAGGAATCTACTGAAGATGAGGATATCAGCGTTGATCGCTTACTTCCGAACACACATACCAATAATTCTGTCGAACAAAATGAAATTGTGGCACAAGCGAAGGAATCAGGTGATCAACAATATCGTTTCAAATGTGATTTGTGCAATCGCTATTTTAATAAGGCCGAATCGTTTGACAAACACCGTTTAGCACATTTGGAGGGAGTTGAGGGGATAGACATATATTCTTGTGAGATGTGCGGCAAGACTTATAGTACACGACCTATATTGAAGCGACATGAGAAAGAAGTACATTTGCGGACAAGAAAGCGGAAACAGAACCGTTCAAAGCAATATAAATGCACATTTCGTAAGAAAATTTTGGAAGGTTCAAAGATGTCACCGGATCATATGCGCACACACACCGCTGAACAAGAGACCTTATTTCATGACAAGCATACCCAAAATTCTGTCGAGCAAAATGAAATTATTGACGAAGGGAAGGAATCTATTGAAGATGAGGATAACAGCATCGAAAGCTTACTTCCGAACACACATACCGAGAATTCTGCCGAACTAAACGCAAGTTTAAATGAGGATAACAGCATCGAAAGCTTACTTCCGAACACACATACCGAGAATTCCGCCGAACTAAACGCAGTTTTAAATGAGGATAACAGCATCGAAAGCTTACTTCCGAACACACATACCGAGAATTCTGCCGAACTAAGCGCAATTATGGAACAAGCAAATAAATCAGGTGATCAACAATATCGTTTGAAATGTGATTTGTGCAATCGCTATTTTAATAAGGCCGAATCGTTTGACAAACATCGTTTAGCACATATGGAGGGAGTGAAGGAGGGGCTAGACATATATTCTTGTGAGATGTGCGGCAAGACTTATAGTACACGGCCTATATTGAAGCGACATGAGAAAGAAGTACATTTACGGACAAGAAAGCGGAAACGATCAAAGCAGTGTAAATGCATATTTTGTGAGAAAAttttggaAAGTTCAATGTTGCAGGATCATATGCGTACACACACCGATGAACAAGAGACCTCATTGCATACCAAATATTCTGCCGAACAAAACGAAATTATGGAACAAGAGAAGGAATCAAGTGATCAACAATATAGTTTCAAATGTGATTTGTGCAATCGCTATTTTTATAAAGCCGAATCGCTTCATAAACATCGTTTAGCACATGTAGAGGAAGATAAGCAGGGGCTAGACATACATTCTTGTGAACTTTGTGGCAAGATTTTTAATACACCGGGTTTGAAAAATTCAATGATGTTTAAGGACCATATGCGGACACATACAGATGTACATCAATATTTATGTTCCGAATGTGGCAAAGTATTCAAGTCAAAACGCCAATTAAATGACCACATTGAGCGACACATTAACACCAAACTCATAGAATGTCCGTATTGCCCCAAAACatttaattgtaaaaatgaTTTATGCGCACACAAAGCAATACACAAAGGTGTCAAACGACACGTTTGTGATATATGTGGTAAATCatttattaaacgaaatcaattgAAGGTGCACAAGACATATCACACCGATGAAAAACCGTATAAATGTGATTATTGTGAAATGCGCTTCCATCGCATGGATAACCAACGCACTCATATGCGCAAGCACACCGGCGAAAAGCCTTACAAATGCAAATATTGTGAGCGCGCTTTTTCACAAAGCGGTGATCATGTAAAACATTTACGTTCCCATTTGGGTGAGAATGTTTATTGGTGTGAGCTATGTCCGGCCACTTTTCGTTTGATGTCAGAGTTGCGTCTGCACTTTGCGACGCATAAGAATGAGGACCCAGAGACACGGGAGCGTAATTTGAAGGCGTTAAAGGAAGCAGAAGCtgaattacaattaaaattgatGAACAAGGCGGAGAGTCGTTAA
Protein Sequence: MDTRYERNLGRFCRTCMHDVTKATATTSEPKRHWQFISDTVTEFGKWSIAELLSKTMPQIKVDLNDERMPTKICDECLLQLRNSYRFQMICLRTDQQLHELLAKIHCDIIEKKEISEIIFPMQEIPLKTIDRAKMADAADPLESTIDDIVVGQTAAGAGNTDEFIKDERCGDDERGIEYDSDREIFHSAIDIKDEIFEAEPTDEEKSNESLIPNTHTKNSAEQNEIVAQAKKSGEKYRFKCDLCNRYFNKAESFDKHRLAHMEGVKEGLDIYSCEMCGKTYSTRAILKRHEKEVHLRTKKRKQNRSKQYKCIYREKILESSNMSPEHMLTHTAEQENFFGTHTKNSVKQNEIIQVEKESTEDEDISVDRLLPNTHTNNSVEQNEIVAQAKESGDQQYRFKCDLCNRYFNKAESFDKHRLAHLEGVEGIDIYSCEMCGKTYSTRPILKRHEKEVHLRTRKRKQNRSKQYKCTFRKKILEGSKMSPDHMRTHTAEQETLFHDKHTQNSVEQNEIIDEGKESIEDEDNSIESLLPNTHTENSAELNASLNEDNSIESLLPNTHTENSAELNAVLNEDNSIESLLPNTHTENSAELSAIMEQANKSGDQQYRLKCDLCNRYFNKAESFDKHRLAHMEGVKEGLDIYSCEMCGKTYSTRPILKRHEKEVHLRTRKRKRSKQCKCIFCEKILESSMLQDHMRTHTDEQETSLHTKYSAEQNEIMEQEKESSDQQYSFKCDLCNRYFYKAESLHKHRLAHVEEDKQGLDIHSCELCGKIFNTPGLKNSMMFKDHMRTHTDVHQYLCSECGKVFKSKRQLNDHIERHINTKLIECPYCPKTFNCKNDLCAHKAIHKGVKRHVCDICGKSFIKRNQLKVHKTYHTDEKPYKCDYCEMRFHRMDNQRTHMRKHTGEKPYKCKYCERAFSQSGDHVKHLRSHLGENVYWCELCPATFRLMSELRLHFATHKNEDPETRERNLKALKEAEAELQLKLMNKAESR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -