Ucar015222.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482671.1:107758144-107764229[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00072 0.095 14.5 1.1 2 23 240 262 239 262 0.97 2 11 0.00027 0.036 15.9 2.2 1 23 269 292 269 292 0.93 3 11 0.002 0.27 13.1 0.1 1 23 298 323 298 323 0.93 4 11 0.007 0.93 11.4 0.6 5 23 345 364 341 364 0.92 5 11 5.3e-05 0.0071 18.1 2.1 2 23 380 402 379 402 0.96 6 11 0.006 0.79 11.6 0.1 1 23 408 430 408 430 0.98 7 11 0.00016 0.021 16.6 0.8 1 23 437 460 437 460 0.98 8 11 0.00021 0.028 16.2 1.7 1 23 466 488 466 488 0.97 9 11 1.8e-05 0.0023 19.6 0.7 1 23 494 516 494 516 0.97 10 11 6.9e-06 0.00091 20.9 1.9 1 23 523 545 523 545 0.97 11 11 0.0037 0.49 12.3 0.8 3 23 553 573 551 573 0.95
Sequence Information
- Coding Sequence
- atgaataaattaACGCGAGATAATTTGCAAGAATTTTGTCGAACGTGTCTGGGTAGTTTGCAAAGTCCTCCACTTATAACCCTTGAAGCAAACGCTGATAACTCTGATGCAATCGATGTAAAACAAATGtatatcttaaatttattgCCGCAATTACGAGAAATGCTTATTTCATTGACATCCTCGGACAATGCGAGAATCAGCAGCCACGACATCGATGATAATGGGCAAATTTATCCGCAAAGTTTGTGTCGGCTGTGTTACGATAAGTTGATTGACTTCCAAGAATTCCGAAATTTGGTAATTACTTCAGCTGATATTCTTTACAAAATTGTAAATAACAGAATTGAGGATGTTCCGATGGGGGAAACCCCTTACGAAAACGATGATGGTGACGATAATTTGaTCTTACCTGAAGTGGCACCTCTAATGGGAAAGACAATAAAAACTGAACCAGCAGGCGACGGATTTATACTACCAAATTATGAATGTGCTGCAATTCCCTCAAACGTGTTTATTAAAGACGAAATCGATTTGGGATATGAAAAAGAAGGAGATGTGGAAGAAGAACATGACTCACTTCTTTGTTCAAACACTTCGATCAACGGAGATGTTGATACCGGCTTAGGAGAAAATTATTCAGTAAATTTTCACAGTGCAGCCTTGAGTAATGCCCAAGAGGATGTGGCTGACGCAACATATAAAAAACGGTCTTTAAAATGTCCGCGTTGCGAAAAGATAGTCTACAAACAAACCTATCTACACGCACATATACGTACAGAGCACGAGGGTCATGAGAAGGGATTTCTCTGTGTCGAATGTCAGAAGGACTTTACGCGTTACGATGATCTGCATAAGCATATACAGCTGAAACATACAAAGCAGGAAAGATTTATATGTGGCATAAATGGCTGTGGTGCGAAATTTAGACTAAGCAGAACTTTGGAGAAACATTGGAGAGTTGGACACGATACATCTTCCAACAATTTACAAGAGCTGCAATacttacaacaacaaaaattgatttgtatactttgttcaaaaaaatatagttcaAATCGTGCCCTGTTCGCACATCAAAAGCGAGATCACTCGGACGATTTTCCAGAGCTGCAAAACGTACAACAACAAAGATTAATTTGTAAGATTTGTTCAAAAAGTTATAGTTCAAAACGTACGCTGTTCGAACATCAAAAGCGGAGTCACTGGGATGAGCGCAAATATGTTTGCAAAGTGTGTAATGTGGCGAAGGTGACAAATCGCGAACTACAAATTCATATACAAACTCATAAACCGAATCgtgaaaaatttaaatgtaGTATTTGCCCGCAAGAATTTAATCACAAAAATGCCATTTCACGACATGTGCGCGTTGTGCACGAGGGACAACGTCGCTTTCCCTGCAGCTATTGTCCGAGACGCTTCAGTACACGCAATTCACAAACGAATCACGAACGCTTGCACACCGGTGAACGGCCATTCGCTTGTGAGTTGTGCCACAGAAGTTTTATACAAATCGAAGGACTAAAAGCGCATATGAAAAGCCACGATGACACTTTACGCCAACATGTCTGTACGATTTGTGACAAACGTTTTATTACTAAAAAGAATCTGCTGGATCATGCACAACGACATCAGAGCGATAAGCCACATTTGTGCAATGTTTGTAGTCGTGGTTATTCTTCCATTGAAGATTTGAATGCACACAAACAATCGCACACCAAGGAGGAGCTACAAGCGCGAATGGTGCGAAAGAACGAGCAATATCAAGATGGCGATGACGCTCAACATTTAGGTGGGTCAGAATCAGTGGTGGAGGCATTTTTGGGCTGCAGCAGTTCGATGAGTAGCTTTGAATCCAAttctactactactactactattTAA
- Protein Sequence
- MNKLTRDNLQEFCRTCLGSLQSPPLITLEANADNSDAIDVKQMYILNLLPQLREMLISLTSSDNARISSHDIDDNGQIYPQSLCRLCYDKLIDFQEFRNLVITSADILYKIVNNRIEDVPMGETPYENDDGDDNLILPEVAPLMGKTIKTEPAGDGFILPNYECAAIPSNVFIKDEIDLGYEKEGDVEEEHDSLLCSNTSINGDVDTGLGENYSVNFHSAALSNAQEDVADATYKKRSLKCPRCEKIVYKQTYLHAHIRTEHEGHEKGFLCVECQKDFTRYDDLHKHIQLKHTKQERFICGINGCGAKFRLSRTLEKHWRVGHDTSSNNLQELQYLQQQKLICILCSKKYSSNRALFAHQKRDHSDDFPELQNVQQQRLICKICSKSYSSKRTLFEHQKRSHWDERKYVCKVCNVAKVTNRELQIHIQTHKPNREKFKCSICPQEFNHKNAISRHVRVVHEGQRRFPCSYCPRRFSTRNSQTNHERLHTGERPFACELCHRSFIQIEGLKAHMKSHDDTLRQHVCTICDKRFITKKNLLDHAQRHQSDKPHLCNVCSRGYSSIEDLNAHKQSHTKEELQARMVRKNEQYQDGDDAQHLGGSESVVEAFLGCSSSMSSFESNSTTTTTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -