Basic Information

Insect: Urophora cardui
Gene Symbol: -
Assembly: GCA_960531455.1
Location: OY482673.1:134857371-134868880[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00011 0.014 17.1 1.6 1 23 383 405 383 405 0.93

2 9 1.9e-08 2.5e-06 29.0 2.4 1 23 411 433 411 433 0.98

3 9 5.8e-05 0.0077 17.9 0.9 1 23 439 461 439 461 0.98

4 9 5.8e-06 0.00077 21.1 0.9 1 23 467 489 467 489 0.98

5 9 3.9e-05 0.0052 18.5 1.4 2 23 579 600 578 600 0.96

6 9 4.1e-09 5.4e-07 31.0 1.6 1 23 606 628 606 628 0.98

7 9 0.0025 0.33 12.8 0.7 3 23 636 656 634 656 0.98

8 9 0.0002 0.027 16.2 0.8 1 23 662 684 662 684 0.99

9 9 0.022 3 9.8 1.1 1 23 691 715 691 715 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00011	0.014	17.1	1.6	1	23	383	405	383	405	0.93
2	9	1.9e-08	2.5e-06	29.0	2.4	1	23	411	433	411	433	0.98
3	9	5.8e-05	0.0077	17.9	0.9	1	23	439	461	439	461	0.98
4	9	5.8e-06	0.00077	21.1	0.9	1	23	467	489	467	489	0.98
5	9	3.9e-05	0.0052	18.5	1.4	2	23	579	600	578	600	0.96
6	9	4.1e-09	5.4e-07	31.0	1.6	1	23	606	628	606	628	0.98
7	9	0.0025	0.33	12.8	0.7	3	23	636	656	634	656	0.98
8	9	0.0002	0.027	16.2	0.8	1	23	662	684	662	684	0.99
9	9	0.022	3	9.8	1.1	1	23	691	715	691	715	0.95

Sequence Information

Coding Sequence: ATGGCGATCAATTTCTCCGCATCATTTGCGGCTTGCATCGCCGCTGGATTGAAGGTGCCCCGACAAATAATGTACTGCATAACGCAGGACACCGGCCAACCGTATGTGCTGTATAAGGATTCACAAGATGGCGAACGTAATCCGGCGGCTATTGGCGGTTCGGCTGCACAATGGGGCAGTGAAATGTATCCGGGTATACAGCAACAAGCGCAACAACATTTACAAGCGCAACAACAACAGAATGGACAAAATCCGGCCGCACAAATAGCGAGTGCCGCCCAAGCGGCTGCTGCAGCGGTagcacaacagcaacaacaacagcagcagcagcagcagcaacaaggACAACAGCCACACAGTCCGACGGGTGATCCGAATGTGCGTGAGAATGGTGGCGATGGCGTGGGTAGGCAACAGGGTTCACCATCGACCAGTCCGTATCCGCCGCAGCAGCGAGTGAATGGTGGTGGTCCGGATGATGATGTCACCATGAGTCAGGTCGCCAACCTGCAGGCCAGCCAACAACAGAATTCGGCGCAGCCCAATCCAAACCAAAGCAACAATGACCCGCAACAGCATCAAAGTTCCGGCGGCGATGCGGGCACGGGGAATCCCCAACAACAACACGTACAGAACGGTGGCGGCCCCACCGGCCAATCGGGCCAGCCCAACGATAACTTCCAGGGACCGCAGGGTGGCGAACTTGGCGGCTATTATGCGCCACGTCATCCTGGACCACAAGGTGGCATGTTGCCACCACCCGGCTTTCCCGGCCTACACTATCTCAACAAGCCCGTGCTGCCTGGCATGGCAGGCGCTATGGAGCAGAATGGCGGTTTGGAGGCGTATGCTATGCCTGAACTATTGCCCGGCGGTGGCGCTGGCGGCAGTGGTGGCCAGCAAGGCCAGAATGGACAACAAAACGGTGGCGGCGCTGGTGGCAACAATCACAATGGCGGCGGTGGCAATAATGGCGCCGATGGTGGTGCTGGCGGCAATCCGGCGAGTGGTACTGGTAATAATAGTGGCGGCACTGGCACTGGCACCGGTGGCACTGGTGCTGGCACAGGTACCGGCACGGGCAGTGGTCGTGGACGTCATCCAAATCCAAATAAACCACCCAAACCGCATAGCGATTTACGTTTATTCAAATGTTTGACCTGCGGTAAAGATTTCAAACAGAAGAGTACGTTGCTGCAGCATGACCGCATTCACACCGATGCGCGTCCCTATCCATGTTCGGAGTGTGGCAAACGTTTCCGCCAGCAGTCGCATCTGACACAGCATCTACGCATTCATGCCAATGAGAAGCCGTTCACGTGTGGCTATTGTTCGCGCAGCTTTCGTCAGCGGGCGATACTCAACCAACATATACGCATCCATTCGGGTGAGAAGCCCTACGCATGCCCAGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAACATGTGCGCACCCACCAAGATGTCTCACCGAATCTTATCTTCAAGAATGGGCCACATCCAACTCTTTGGCCACAAGATGTACCATATCCGGGTGATGAGACTGACACGAAGGGTGATATAGCAAGCGGCAGTGGTTATCATGATGAGGATTCACAGGGTACACCAGATGGCAGTGGCGGTATACATTATCCATCATACTTTAAGGACAGCAAAGGGCAAAAAATTCTGCCAGACGTCCTACAACATATCGGCGTAAGACCAGCCAATATGCCATTATATGTACGTTGTCCCATTTGTGACAAGGAATTCAAACAGAAGACAACTTTGCTGCAACACGGTTGCATACACATCGAGTCGCGACCGTATCCATGTCCGGAATGCGGTAAGCGTTTCCGTCAACAATCGCACCTAACGCAACATTTACGAATACATACGAATGAGAAGCCGTTTGGGTGTTTGTATTGTCCGCGTTTCTTCCGGCAGCGCACCATATTGAATCAGCATATTCGCATCCATACCGGCGAGAAGCCGTACAAATGCGCGCAATGTGGTAAAGATTTCCGACAGAAGGCCATACTGGATCAGCATACACGCACTCACCAGGTAGGCGATCGGCCGTTCTGCTGTCCAATGCCAAATTGTCGACGCCGCTTCGCCACCGAAAACGAAGTGACAAAACACATCGACAACCACATGAACCCGAACACGACAAAAGCGCGCCGCCAAAACAATGCGAATAATCCGAATGCCGCCAACAACGCCAACAATCCGAATGCCAATAGTCATGCCGCCGCCGCTGCGGCATCAGCTGCTGCTGCGGCAGCTGCCGCCAATCATTTAATGAACGAAACCAAGAATGCGGCACAACAATTTCTGAATAACAATAATCCGGCTTTGGGCGACAATAAGGCGAACATATTGCCACGCGCCATGGCTGCAGCACAAAATGCGGCCGTTCAGCAATCGGTGGTGAAGAATGAGCTGTACTTCCCGCAATGCTATGGACCGCCATTCCAGCAGGCCTTCCAAACGCAAGGACAGCCCACAGCGGCGCATAGCGGTGCTCCACAGCCGCCAGTGCCGAATTCTGTGGCGCCCGGGGTGGTGGTGCAACAAAATACGTCCACATCGGTGGTGGCACAGTGA
Protein Sequence: MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDGERNPAAIGGSAAQWGSEMYPGIQQQAQQHLQAQQQQNGQNPAAQIASAAQAAAAAVAQQQQQQQQQQQQQGQQPHSPTGDPNVRENGGDGVGRQQGSPSTSPYPPQQRVNGGGPDDDVTMSQVANLQASQQQNSAQPNPNQSNNDPQQHQSSGGDAGTGNPQQQHVQNGGGPTGQSGQPNDNFQGPQGGELGGYYAPRHPGPQGGMLPPPGFPGLHYLNKPVLPGMAGAMEQNGGLEAYAMPELLPGGGAGGSGGQQGQNGQQNGGGAGGNNHNGGGGNNGADGGAGGNPASGTGNNSGGTGTGTGGTGAGTGTGTGSGRGRHPNPNKPPKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPYPCSECGKRFRQQSHLTQHLRIHANEKPFTCGYCSRSFRQRAILNQHIRIHSGEKPYACPECGKHFRQKAILNQHVRTHQDVSPNLIFKNGPHPTLWPQDVPYPGDETDTKGDIASGSGYHDEDSQGTPDGSGGIHYPSYFKDSKGQKILPDVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCLYCPRFFRQRTILNQHIRIHTGEKPYKCAQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNTTKARRQNNANNPNAANNANNPNANSHAAAAAASAAAAAAAANHLMNETKNAAQQFLNNNNPALGDNKANILPRAMAAAQNAAVQQSVVKNELYFPQCYGPPFQQAFQTQGQPTAAHSGAPQPPVPNSVAPGVVVQQNTSTSVVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00190833;
90% Identity: iTF_00091577;
80% Identity: -