Ucar039034.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Urophora cardui
Gene Symbol
-
Assembly
GCA_960531455.1
Location
OY482674.1:132602847-132605919[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0023 0.31 12.9 2.9 1 23 256 278 256 278 0.97
2 12 3.4e-06 0.00045 21.8 2.4 1 23 284 306 284 306 0.98
3 12 0.00018 0.024 16.4 0.1 1 23 311 333 311 333 0.97
4 12 6.6e-06 0.00087 20.9 3.3 1 23 339 361 339 361 0.98
5 12 0.17 22 7.1 6.5 1 23 367 390 367 390 0.93
6 12 0.065 8.6 8.4 3.0 1 23 629 652 629 652 0.95
7 12 0.00011 0.015 17.1 8.1 1 23 660 682 660 683 0.96
8 12 0.00015 0.02 16.6 0.4 2 23 701 722 700 722 0.97
9 12 1.7e-05 0.0023 19.6 3.9 1 23 728 750 728 750 0.98
10 12 0.00025 0.033 16.0 0.1 2 23 756 777 755 777 0.96
11 12 4.5e-05 0.006 18.3 1.7 3 23 785 805 783 805 0.98
12 12 7.2e-05 0.0095 17.7 1.4 1 23 811 834 811 834 0.97

Sequence Information

Coding Sequence
ATGTTTTCTGTAAACAATTCAGCCGGCCAAGAAATGGATGGAGGTACTGCATCTTCAGGTGACTGGCGCAATTGGTGTCGTTTATGCGCCAAGGAGGATGAACTAAATAGGAATATATATTTGAAGGATGATTTCGTACATAATGAAGAAGACATGACCGCTGAAAGGCTCATCAGCGTAATAAACGAATATTTTAGCGTGGAGATACAAATGTTAGATACACTTCCGCAAAATTTGTGCTTAGACTGCCTCTCATTTCTCAGAACACTTATGAGTTTCCAACGACGAGTTTTAAAAGTGCAGCAAATGTATGCTGAATTGAAGAATCTTTCAGaggcaaaaaatattaaaactcaAGCTTTGCGCTTAAAGTTTCAGTTAATGGATGCGGCAGGCACCGAAGAATCAATGGTGGCGGCCATGATCATAAAAAAAGAGGAAGAAAATGTCGCACCAGCGGATGAAGGGGTGTGTGACTTTCAAAGTGATGAAGCCATGGTCATAAACCATGTGGAAGAAAAGGAAGTCAAACCAACAGATGGTGTATACGATATTCAAAGGGAGGAAGCTATGATCATTAAACAAGAGGAGGAGGACGAAGTTGCAACAGCAGGTGAAATTGTGTGCGAATTTCAAAGTGCGGAAGCTGCTGAACCGTACGGTACAGCGTCGGAAGATAATCTATACCGTAATGCAAAAGACTATAGTGATGCGGATATATCTGAAGCCGAAACCACAGCAAAACAAGCTGAGGCTGCATACAAGTACTTTTGTATGAAATGTCCACGACGGTTTCAATACAAATCAGACTATAGCACGCACTTGCTAACGCATGCACTTTATGCGCCCTTCGAATGTGAAGTGTGCAAGAAGCGTTTTAAAAGTCAAGAGCGTTTGAAGAACCATATGAGCACCCACAGCGTCGAAAACTATATATGCCGCGAATGTGGCTTAAAACTGGGCACGAAATCAGCCCTCAATCGGCACATGATCCTACATTCCGATataatgaaatatgtatgtgatTATTGCGGAAGAACTTTCAAACACCGCAACTCGTATACGACACATTTGATGATTCATTGTGGCTTCAAGCCACATTCATGCGAATTCTGTGATATGGCATTTACCAGTGCTTCGCACTGTCGTTCCCACATGTATTATAACCATCCAAGTGAGTTTGCTGAGATGCAGGCGTCGGGAAAATGGAAGCCTACCAAAAATATACCCACATTAGATGTGTTGAAAGCGATCATAAGCAAAGGTGAAAATTTAGTACCGGTGCTAGCAAAGGGTGCTAAGAAACCAAATACACAAACGGTTGCTGCTGATTGTGCACAAGAGTCTGAGAATCTTGCAGAGGCGAAAAACATTAAAACTCAAGCTTTGCGCTTAAAAGGTCAGTTAAGGGATGTTGAAGAATCGATGGTGGCGACCATGGTCATAAAAACAGAGGAAGAAAATGTCGCAACAGCGGATGAAAGTGTGTGCGACTTTCAAAGTGATGAGGCCACGTTCTTAAACCATGAGGAGGAAAAGGAAGTCGCAACAACAGATGGTGTGTACGATATTCAAAGAGAGAGAGGGGAAGCTATGCTCATTAAACAAGAGGAGGAGGATGAAGTCTCAACCGCAGATGAAAGTGTGTGCGATCATAAAAGCGAGGAAGCCATGGACATTAAACAAGAGGAGGAGGAGGAAATCGCAACAGCGGATGAAAGTATGTGCGATTTTCAAAGTGAGGAAGCTGCCGACTGTGAAAATAAACCGTGCGGTACAGCTTCGGAAGATGAAGGTGAATACCGTGATGCAAAAGAAGACTATAGTGACGCGGATATATCTGAACCCGAAGCCACAGCAAAACAAGCTGCGGCTGAGTACAAGTACTTTTGTATGAAGTGTCCACAACGGTTTCAATTCAAATCATCCTATAGCACGCACTTGTCTATAAAACATGGCATCATGGTAAAGCCCACATATTCCTGTAGCACATGTCAGCGAAACTTCAAAGATTGCTATAGCTTAACGCGACACATGAAATCTCATCACCCAGAAAAAGTATGCCCAATTGAATTCGTGCATGAAAATACACGACTGCTGAAATGCGAAGTGTGTGGTGCAGCGATTAGAACACAACGTACGTTTCGTCGACATATGCTAACGCATACAGATTATGCGCCCTTCGAATGTGAAGTGTGTAAGAAGTGTTTTAAAAGTGAAGAGCGTTTGAAGAACCATATGAGCACCCACAGTGCCGAAAAGCAAACGTGCAGCGAATGTGGCGTAGAACTGAGCTCGAAAATAAATCTCAATCGGCACATGGTCGTACATTCCGATGTAATGAAATATGGATGTGATTATTGCGAAAAGACTTTCAAATACTCCACCTCGTATAGGACACATTTGATGACGCATTGTGGTTTGAAGCCATATTCATGCGTATTCTGTGATAAAACATTTGCCAGTGCTTCGAACCGTCGCTCGCACATGACTCGTAACCATCCAAGTGAATTAGCTGAAATGCAGACGTCGGGCGAATGGAAGCCTACGAAAAATATACCCACAATAGATGTGTTGAAAGCGATGTTGAGCAAGGGTGAAAATATACTACCGGTGATATCAAAAGGTGGTAAGAAACCAAAGACCCAAATGGTTGTTGCTGATCGCGCACAAAAGTCTGATCAGCCGCAGGAGACGGCAGTAGTTGAAGAATCTAAggaatttataaaaatttaa
Protein Sequence
MFSVNNSAGQEMDGGTASSGDWRNWCRLCAKEDELNRNIYLKDDFVHNEEDMTAERLISVINEYFSVEIQMLDTLPQNLCLDCLSFLRTLMSFQRRVLKVQQMYAELKNLSEAKNIKTQALRLKFQLMDAAGTEESMVAAMIIKKEEENVAPADEGVCDFQSDEAMVINHVEEKEVKPTDGVYDIQREEAMIIKQEEEDEVATAGEIVCEFQSAEAAEPYGTASEDNLYRNAKDYSDADISEAETTAKQAEAAYKYFCMKCPRRFQYKSDYSTHLLTHALYAPFECEVCKKRFKSQERLKNHMSTHSVENYICRECGLKLGTKSALNRHMILHSDIMKYVCDYCGRTFKHRNSYTTHLMIHCGFKPHSCEFCDMAFTSASHCRSHMYYNHPSEFAEMQASGKWKPTKNIPTLDVLKAIISKGENLVPVLAKGAKKPNTQTVAADCAQESENLAEAKNIKTQALRLKGQLRDVEESMVATMVIKTEEENVATADESVCDFQSDEATFLNHEEEKEVATTDGVYDIQRERGEAMLIKQEEEDEVSTADESVCDHKSEEAMDIKQEEEEEIATADESMCDFQSEEAADCENKPCGTASEDEGEYRDAKEDYSDADISEPEATAKQAAAEYKYFCMKCPQRFQFKSSYSTHLSIKHGIMVKPTYSCSTCQRNFKDCYSLTRHMKSHHPEKVCPIEFVHENTRLLKCEVCGAAIRTQRTFRRHMLTHTDYAPFECEVCKKCFKSEERLKNHMSTHSAEKQTCSECGVELSSKINLNRHMVVHSDVMKYGCDYCEKTFKYSTSYRTHLMTHCGLKPYSCVFCDKTFASASNRRSHMTRNHPSELAEMQTSGEWKPTKNIPTIDVLKAMLSKGENILPVISKGGKKPKTQMVVADRAQKSDQPQETAVVEESKEFIKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-