Ucar018056.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482672.1:9223148-9227817[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.6e-05 0.01 17.6 1.3 1 23 224 246 224 246 0.95 2 15 0.002 0.26 13.1 2.3 3 23 254 274 252 274 0.95 3 15 1.3e-05 0.0017 20.0 0.1 1 23 403 425 403 425 0.98 4 15 0.00095 0.13 14.1 0.3 1 23 431 453 431 453 0.98 5 15 4.6e-05 0.0061 18.3 1.9 1 23 485 507 485 507 0.98 6 15 0.013 1.7 10.6 0.3 1 23 525 547 525 547 0.94 7 15 0.004 0.53 12.2 0.3 1 23 553 576 553 576 0.98 8 15 0.41 54 5.9 0.3 5 19 587 601 584 602 0.91 9 15 9.6e-05 0.013 17.3 6.6 1 23 611 633 611 633 0.97 10 15 0.072 9.6 8.2 0.3 3 23 640 660 638 660 0.96 11 15 1.4e-05 0.0019 19.9 0.3 1 23 668 690 668 690 0.98 12 15 0.0071 0.94 11.4 0.2 3 23 698 718 696 718 0.97 13 15 0.00082 0.11 14.3 0.5 1 23 724 746 724 747 0.95 14 15 0.79 1e+02 5.0 0.3 1 23 757 779 757 779 0.96 15 15 0.068 9.1 8.3 0.0 1 20 1379 1398 1379 1401 0.93
Sequence Information
- Coding Sequence
- ATGGATCGACGAACATATGAAATAAAGTGGATACAAAGCAACCTGAGTTCCATGAAAACCGCTACTAACAACTGTGGCGAATTGATTGCGAAGTCTCAATTAACTTCCGGAGAACAATTACTGGCGTTGAATGGCGTTATGCAAGCCGAAGGGAGTACCAACGCCTATCATTTAATCGCTGGCGAAGATGATGGGAATAATGACAATGCTGGCGATGGTAGCGGTGGTGGTAATATACCAAATACCGATGACGATATTGATCAAATAGCAGCTGAGAATTTAATATTTATGGCACGAGATGGACAAATTGTAGCAGATATCATAGGTGCAACTACCGAAAGTGATGGTACTGTTGTTGTGGCCGCATCTGACGGCTGTGCTGCTGAAGTGCTGCAACAAGCTGCCGTTGTTAGCACTGAGTTGCAACGGGGTCAGCAGCATCTGGTAGAGGGAGGCAGTGGTGCGGCTGGTGAATATGTTGACGAGTTTGTCGATGATACACCACAAATAATAACGGAGGAGGTGATAACTGATGACTGGGTGCAGCGTCAAGGCGAGGAACGTGTGGAAATACCTGTGGAACAAATAATTGGTTCTGGCACGCAGGTCTCACTTGACATGGATGTACCGCTACCCACAGTCCAGGATGAATATACAGCACTTCGGCCATATCCGTGTGATTTCTGTAGTCGCCGGTTTCGCAAAAAGACAAACTTAATGAACCATATGGTTGCGCATCAAAATGATCGTCCACATTTGTGTAAGTTGTGCGGTTCGCGTTTCTTTCGTCGTTCGGATTTGATAAATCATTTGAAAGCACACGCTGATGCGCCTGATCCTGAAATGGATGCAGAGTTTATGCATTTCACGGAGAAAGAGCGTCCGGCTAATGATCACTATTATGAACAGGATTGGACTACGCAAATACGTAACGTGCAACGTAATGAAAAATCTAGTCGTAAATCGCACAATGCAAGCGGTAACAGTTCATCTACCTCAACCTCAACAACTGTAGGACGTGGCCGTATTAGCCGTCTAAAGCCCAAAGAAGAAGTATATGTTTTAAATGAACCGTTGGCCAATGAAACCGAAGCCGTTTACGACGACTGCCAACAATTGCAAGCCTCTACGGCTGTGGTAAAATTCACACAAAATCAATCACCAGCACATGAAGTAAATTTTCCCATTATCGATGAGAGTAAACCGTTTGTTTGTCAGCAGTGTGGCTTGGCATTTGCACGCCAGAAAGCATTGCAAGCACATACAAAGATTCACAGCGAAGATCAGCCGCACGAGTGTAGTGATTGCAATGAAATGTTTTGGGATGCAGCCAGTCTGCAAGAGCATCAGAAAATGCATCAATTCGTATATAGCAATTCAGAGTACGATCCAGAGGAGGCAGAAGCGGATGAGACACAAAGTGAATCGGAATCCGAGCGCTTGTACGGCGAATTTTATTGTAGCGAATGCGGCGTATCATTTCATCGTGAAGATCTACTACGCAAACACGCGAAGACCCATGCAAAAAGTAAACACGATGTTGTGGCGAAGCGCAACGATAAAGATCAGCAGCATTGCTGCAATACCTGCGGCGAAACATTTGCTGAAGCCTTAGATTTATTGGCGCATGCCGAAATTCATGCGCGTTCTCCACCATTTAAATGTGTTCTATGTGGCGAGAGCTTCTTCGAAGAAGTCACAATTAAACGCCACCTACAAACGGTGCATCAACACGATATGACACCCAATTCGTGCATACTTTGCggcaaggaatgtcgcgatcgTAAGGCATTGATCAAACACGCGTGGGATCATTCGCGCGAAAAGTGTCATTCGTGCTCGAAATGTGGCAAGAGTTTTCACAATAAAGCGCGTCTGAAGCGACACATGTCGTCGCATCGCGACAAATCCGTTATATGTGATGTGTGTCAAGAGGAATTTCCCGACGGACGCAGCCTCTCCAATCATCGGCATTCGCATACGAATGCGCCGGGCAAAATGTTTCCCTGCAATGAATGTGGCAAAACTTTTGGCTCGCGCAGTTCACAACAAATTCACGTGCGCATACATACGGGCGAAAAACCGTACGGTTGCCGTTTCTGTTGGAAGGCATTTGCCGATGGCGGCACATTACGCAAACACGAACGCATACATACGGGTGAGAAGCCGTACGCTTGTTCGGTGTGTGCGCGTGCCTTCAATCAACGTGTCGTGCTGCGCGAACACATACGTTCACATCATTCGGGCTTGGATGCGAAACGTAACACCTACCATTGCACGGTGTGTGCCATGGATATGTCATCGTCTGGCGAATTAGTAAAGCATCTAATACAGCACAGCGATATGAATACGGCCATGCAAAGGCAACCAGTGACTGGTCCACGAAAATACAAGCGACGCAGGAAGCTCAAACCGCATGAAATTGCACATGAAATTGCACGCCTACGCAAGTCTGACAGTCAGCAAAACGATACAAATGGCAGCGATATTGACATCTCCGATTTTGATATAGTTGATAATGTTGATGACATTTTAGGCATAACTGAGACTACTCCTCCCCCCAGCGCTAAAGCAAACGCCAAATCAAAACGTGATAAAAACCGCCTTAGTTCCAATACGAACACATTAATAGGCGATAGCGAACATACCTTAATTATGCCAGATAATGATTTGCTAATGGAACGACCGAGAAAACCGCGCTATAAATCAACTGGAAGTAATTCGGATTCATTGTGGCAAACGAAACTAATTAATTCGAATACATTGCTTTCCAACTTGGAGAATACTTTACAAAGTATAGATACCTTAGTCGTAGGCTCAACGCTTAACCAAAATGCGGACAGTGAAGAGCGTAGAGTGAGGTATAAATCCGGTGGCGAGCCGACGACGACGCCACCACCGCCAGCGAATAGCAGCGGTTCACAGCGTACGCAAGAGGTGAGGATCAATAAAAATCAAGTTGCTAATAGAACACGTAAACGCACAGAAaagtcaacaacaacaacgacgacaacaacaaataaaGCAATGCGACCGCGTATGATACACACCGAAAAGTTGCGCATCAATGGCGGCGATGGTGTTGGACGTAAACGCTCACGCTCCAAGCAGCAAATTGTGATTCATAGGCAACAAAGTGATTTGGCACATGTAATCCatagtggtggtggtggtggcgccACAACAATTGACAATGATTATGACATGATTACAGCGGCAGCTGAGTTGCCAAAACAAATCAGCTCCAGCCCGTCACACATGCACcataaacacacacaaaatgATGTGCGCCAGCAGCATGAACAGCCGCAGCAGCAGCGAAGTTACGACCAACATACACGCTTATACACAAATGCGCAGAAGCCGTGCACGGAAACACGAAATCTCGATCTTTACGATACGAAATTTCTCGATGGCACGTCCACGCTGCGCAAGGAGGCCTACGAGAAATTCAATCCGAGCATAGTTAATGATTTGGAGGAGATATTACGTTCGCCCATCAAATGCGACCGCACCGAACGTCACCGCTACATCAGTGAGTCGTCCACACAGTTCCTCGAAGAGGAACAGCATAATATGATCAAAATTGAGCCAACCTCACCGGATTTACGTGAGATTGTTGTTGGTGTTAGtagtggtggtggtggcgggGATGGTGGTGTTGGTATTGGTGTTGCTGGCAGCAGCAGTAATGAACGTATTGGCAGCTACACAACACGTACACCACGCAAACGCAACTCAACCGTAAATCGTAAATATCTCGAGTTCGAAGCGGATGTGCAAACGCACGCAAATGCCGTAACAAGAACCCAAAAACGTAGCGGTCAAAGTGGCAGCGGTGGCGGTGGTGGCGGCGGTGGCGGTGCATCGAGAAGTAAGCAAAGCAAATGCAGCAGACAAGAGAAGCTGGAGGGGGAATTGTGCAATCAGCGAACGCCTACATCATATACTGCCGCTACCTATAGCTTGGATGTATATGGTAAATCGGCGGGCGGCAGTGGTTCATTAGTTTCCGTCACAGATTCATCCTTTTCCTCGCTCTCGCCCACAGATGGCGGCGTTGCATCGATTGTTGCGGCAACGGAGCCTTTGTCACCAGCCGTCACAACGCAACCGGAACGTAGAAGACGTTATTTCGAATGTGAAATGTGCTCGGCCATATTCCCAGATCGTGCCCAATTGTTGGATCATGTGcccatacatatttaa
- Protein Sequence
- MDRRTYEIKWIQSNLSSMKTATNNCGELIAKSQLTSGEQLLALNGVMQAEGSTNAYHLIAGEDDGNNDNAGDGSGGGNIPNTDDDIDQIAAENLIFMARDGQIVADIIGATTESDGTVVVAASDGCAAEVLQQAAVVSTELQRGQQHLVEGGSGAAGEYVDEFVDDTPQIITEEVITDDWVQRQGEERVEIPVEQIIGSGTQVSLDMDVPLPTVQDEYTALRPYPCDFCSRRFRKKTNLMNHMVAHQNDRPHLCKLCGSRFFRRSDLINHLKAHADAPDPEMDAEFMHFTEKERPANDHYYEQDWTTQIRNVQRNEKSSRKSHNASGNSSSTSTSTTVGRGRISRLKPKEEVYVLNEPLANETEAVYDDCQQLQASTAVVKFTQNQSPAHEVNFPIIDESKPFVCQQCGLAFARQKALQAHTKIHSEDQPHECSDCNEMFWDAASLQEHQKMHQFVYSNSEYDPEEAEADETQSESESERLYGEFYCSECGVSFHREDLLRKHAKTHAKSKHDVVAKRNDKDQQHCCNTCGETFAEALDLLAHAEIHARSPPFKCVLCGESFFEEVTIKRHLQTVHQHDMTPNSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKSFHNKARLKRHMSSHRDKSVICDVCQEEFPDGRSLSNHRHSHTNAPGKMFPCNECGKTFGSRSSQQIHVRIHTGEKPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCARAFNQRVVLREHIRSHHSGLDAKRNTYHCTVCAMDMSSSGELVKHLIQHSDMNTAMQRQPVTGPRKYKRRRKLKPHEIAHEIARLRKSDSQQNDTNGSDIDISDFDIVDNVDDILGITETTPPPSAKANAKSKRDKNRLSSNTNTLIGDSEHTLIMPDNDLLMERPRKPRYKSTGSNSDSLWQTKLINSNTLLSNLENTLQSIDTLVVGSTLNQNADSEERRVRYKSGGEPTTTPPPPANSSGSQRTQEVRINKNQVANRTRKRTEKSTTTTTTTTNKAMRPRMIHTEKLRINGGDGVGRKRSRSKQQIVIHRQQSDLAHVIHSGGGGGATTIDNDYDMITAAAELPKQISSSPSHMHHKHTQNDVRQQHEQPQQQRSYDQHTRLYTNAQKPCTETRNLDLYDTKFLDGTSTLRKEAYEKFNPSIVNDLEEILRSPIKCDRTERHRYISESSTQFLEEEQHNMIKIEPTSPDLREIVVGVSSGGGGGDGGVGIGVAGSSSNERIGSYTTRTPRKRNSTVNRKYLEFEADVQTHANAVTRTQKRSGQSGSGGGGGGGGGASRSKQSKCSRQEKLEGELCNQRTPTSYTAATYSLDVYGKSAGGSGSLVSVTDSSFSSLSPTDGGVASIVAATEPLSPAVTTQPERRRRYFECEMCSAIFPDRAQLLDHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -