Basic Information

Insect: Urophora cardui
Gene Symbol: -
Assembly: GCA_960531455.1
Location: OY482672.1:27109301-27111104[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00021 0.028 16.2 2.3 2 23 142 163 141 163 0.97

2 9 1.8e-06 0.00024 22.7 3.0 1 23 169 191 169 191 0.99

3 9 3.6e-08 4.8e-06 28.0 1.0 1 23 197 219 197 219 0.98

4 9 2.8e-05 0.0037 19.0 3.6 1 23 278 300 278 300 0.99

5 9 8.1e-07 0.00011 23.8 1.0 1 23 306 328 306 328 0.98

6 9 3.6e-06 0.00048 21.8 1.7 1 23 334 356 334 356 0.97

7 9 4.9e-07 6.4e-05 24.5 0.4 1 23 455 477 455 477 0.98

8 9 2.9e-05 0.0039 18.9 1.5 1 23 483 505 483 505 0.99

9 9 2.9e-06 0.00038 22.1 1.5 1 23 511 533 511 533 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00021	0.028	16.2	2.3	2	23	142	163	141	163	0.97
2	9	1.8e-06	0.00024	22.7	3.0	1	23	169	191	169	191	0.99
3	9	3.6e-08	4.8e-06	28.0	1.0	1	23	197	219	197	219	0.98
4	9	2.8e-05	0.0037	19.0	3.6	1	23	278	300	278	300	0.99
5	9	8.1e-07	0.00011	23.8	1.0	1	23	306	328	306	328	0.98
6	9	3.6e-06	0.00048	21.8	1.7	1	23	334	356	334	356	0.97
7	9	4.9e-07	6.4e-05	24.5	0.4	1	23	455	477	455	477	0.98
8	9	2.9e-05	0.0039	18.9	1.5	1	23	483	505	483	505	0.99
9	9	2.9e-06	0.00038	22.1	1.5	1	23	511	533	511	533	0.98

Sequence Information

Coding Sequence: ATGCATCTTAATCACGCCACAGCAATGGCCAATTACCAACATTACCCGCCACCGCAAATATCAACGCACGGTGGTACTGCCACCACCGTGCAACAACAAACGACCATAGCAACGGCGGGTACACCATTTACATTACATCAATTGACAGCCGTACAGGCCATACAACATCCCACCCATCAAGCTATGCTACATCCACAACATCCGCTGGTTCATCTACTCGATATTTCTACAACATCAGCAACAAATACAACTAATCCAACGCCGTTGGCGCCGACTAAAGTCGAATTGCCTGATCATACCGAACAGCAGCAAACCgggcagcagcagcaacagcaacaacaacagcagcagcagcaacaacagcaacagcaactcATACAACCACCCATCGGTGTTAAGTTGGAGGATCCGCGTAAAAAGAAGGAATGTAGCGTTTGCAAGAATAAATTTCGTCAACTTACCACTTTGCGTAATCACATGAAAATCCACACCGATGAACGGCCGTATAAATGTAAACATTGCGATCGGGCATTCCGACAAATTTCCACGCTTACCAATCATGTGAAAATTCATACCGGCGAGAAACCGTTTAACTGCAATATATGCGGCAAAGATTTTCGCCAACAGAGCACACTTATCAATCACATTAAGACACATAAAGAATCCAGCACACCAACTTCACTGTTAAACTATCAACCAAGTGCTAAATATATTAAAGGCGAACCGAAATTGACTCAAAATCAAATGATTGATTATAAAAATCCATCACTAACGAAAACACTATACACCGGCAGCTATAGCTCACCGCAGGCAGAGGAGCTAGTGAAACCGTATCAATGCAATGTTTGTAAAAGACGGTTCCCTCAGATGAGTACACTACATAACCACGAACGGACTCACATCGACCCCAAACCGTATAAGTGTGAAATATGCGAGAAATCATTTAGTCAATTGGCCACATTAACCAATCACAAAAAGATACATTCGGGTGAAAAATTGTTTGCCTGCAACTTTTGTCCGATGCAATTTCGACAGCAGAGCACTCTAAGCAATCACATGAAGACGCACACCACAGCCGCCAGCAATACAAATGCCGCATCAACCACAACCACCACCATGCCTGCACCACAAGGCATCAATCATATGAGTCTAATTTCACAAGGTGGCGAACATCCACAACTAAATAATATGGTACATCAACAATTGCAAGCCGATCATCCATTATTACATTTTCTCGATAGTAATACAACAGTTAGTACGATCGTTACGAAGGAGCAATTCAACAACAACAGTACACCAACATATAGTCGACGCTTCAAAAACGAGGCAGATAGTTTGATGTTGGAGAGTCCAGATCGTCCATTTCCATGCCTAATTTGCCGTAAGGCATTCTCACAACAAAGCACTCTAGCCAATCACATTAAGACGCATACCGGCGAAAAGCCATATAAATGCAAGGTGTGCGAATCAAATTTCCGGCAATTGTCCACATTGAATAatcatttgaaaatacataCCGGCGAGAAGCCGTTTAGTTGTTCCTTTTGTCCCAAACAATTCCGACAGAAGAGTACTCTCGTAAATCATGTTAGGATACACAGTTGttaa
Protein Sequence: MHLNHATAMANYQHYPPPQISTHGGTATTVQQQTTIATAGTPFTLHQLTAVQAIQHPTHQAMLHPQHPLVHLLDISTTSATNTTNPTPLAPTKVELPDHTEQQQTGQQQQQQQQQQQQQQQQQQLIQPPIGVKLEDPRKKKECSVCKNKFRQLTTLRNHMKIHTDERPYKCKHCDRAFRQISTLTNHVKIHTGEKPFNCNICGKDFRQQSTLINHIKTHKESSTPTSLLNYQPSAKYIKGEPKLTQNQMIDYKNPSLTKTLYTGSYSSPQAEELVKPYQCNVCKRRFPQMSTLHNHERTHIDPKPYKCEICEKSFSQLATLTNHKKIHSGEKLFACNFCPMQFRQQSTLSNHMKTHTTAASNTNAASTTTTTMPAPQGINHMSLISQGGEHPQLNNMVHQQLQADHPLLHFLDSNTTVSTIVTKEQFNNNSTPTYSRRFKNEADSLMLESPDRPFPCLICRKAFSQQSTLANHIKTHTGEKPYKCKVCESNFRQLSTLNNHLKIHTGEKPFSCSFCPKQFRQKSTLVNHVRIHSC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01563083;
90% Identity: -
80% Identity: -