Ucar023371.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Urophora cardui
Gene Symbol
-
Assembly
GCA_960531455.1
Location
OY482672.1:122218282-122225576[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 2 2.7e+02 3.7 0.5 1 17 4 20 4 21 0.93
2 28 0.008 1.1 11.2 3.9 1 23 251 273 251 273 0.97
3 28 7.3e-05 0.0097 17.6 1.0 1 23 279 301 279 301 0.98
4 28 0.011 1.5 10.8 2.4 1 23 373 395 373 395 0.98
5 28 0.0012 0.16 13.8 2.5 1 23 401 423 401 423 0.98
6 28 0.00055 0.073 14.9 0.3 2 23 457 478 456 478 0.97
7 28 0.0024 0.32 12.9 1.5 1 23 552 575 552 575 0.98
8 28 2.2 3e+02 3.5 0.2 1 21 582 602 582 603 0.83
9 28 3.2e-06 0.00042 21.9 2.1 2 23 655 676 654 676 0.97
10 28 0.0073 0.97 11.3 0.8 1 23 683 706 683 706 0.95
11 28 0.066 8.8 8.3 1.0 2 23 715 736 714 736 0.96
12 28 0.17 23 7.0 1.5 1 23 836 859 836 859 0.94
13 28 0.082 11 8.0 0.7 1 23 898 921 898 921 0.96
14 28 0.0003 0.039 15.7 0.4 2 23 937 958 936 958 0.97
15 28 3.1e-06 0.00041 22.0 3.5 1 23 965 987 965 987 0.98
16 28 0.00042 0.056 15.2 0.4 1 23 1142 1165 1142 1165 0.96
17 28 0.079 10 8.1 1.2 1 23 1202 1225 1202 1225 0.94
18 28 7.3e-05 0.0097 17.6 0.7 1 23 1240 1262 1240 1262 0.98
19 28 7.2e-05 0.0096 17.7 1.1 1 23 1269 1291 1269 1291 0.98
20 28 0.03 4 9.4 0.5 2 21 1318 1337 1317 1338 0.94
21 28 0.0015 0.2 13.5 3.4 1 23 1389 1412 1389 1412 0.97
22 28 0.29 38 6.3 0.2 1 23 1449 1472 1449 1472 0.95
23 28 0.00021 0.028 16.2 1.4 1 23 1511 1534 1511 1534 0.98
24 28 1.9e-05 0.0025 19.5 0.2 2 23 1576 1597 1575 1597 0.95
25 28 1.7e-05 0.0023 19.6 2.2 1 23 1603 1625 1603 1625 0.99
26 28 2.9e-06 0.00038 22.1 3.4 1 23 1631 1653 1631 1653 0.97
27 28 7e-06 0.00093 20.8 1.3 1 23 1659 1681 1659 1681 0.98
28 28 0.0036 0.47 12.3 0.3 1 21 1687 1707 1687 1711 0.92

Sequence Information

Coding Sequence
ATGGTGTCATACCAGTGTCGTACATGTCGTAAAAAAATTAACGATCGATATAATTTGCTCACAGATATATTGGATGAGGAGCATAAGCCCAGAAAAACGCTTGCCGATTTTCTATGGGATATTGCAAAGATCAATAATAAAACTGAAGATGCAAAGCGTTTGCCACAACAAATTTGTCGAGCTTGCTTTCGCAAATTAAAAAACACCCACTTATTCATAGTGCAAGCGCAAGtagcaaataaaaaattgtttgctaGTTTGTATATTGGAAAAGCTGAATTTAGTTCAGTGCCAAAAAAATCAAGTAATGATTGCTTGTTGGAGGCTCCAATTGACATACCGATAGAGCAAGTAGAaatcaaaaaagaaaatgaCGATGGCGTGGCCGTTGCCGTGGGTAGAAAAGAGCAGTCGCCGGAGTGCAAGGATGCAAATACTAGTATGGAAAAAAGTGATGATGGGATTGGGGAGATGGGTGAGACTGAAAGTGCACTTGCGGTGAAGGAAGAAAGCATGGAAATTCAGAAGGACGAAAAGGATGGTGACACCGAATTTTTGGACGAAAGCATGGCAGTTGATCCCATTACAACCGTAGAGACAAATGAGGAAGATAAAGTAGCCAAAAGTGCTGAGGAAAATGCTAATGATACGGATACAAGCGATAGTGATGCAATTCCGCTAATAAAACGAAGACGTGGCGTTACGACAAAATCGGCATATGACATTACGTATAATGATAATGATGgaaaatttcattgtaataacTGCGATAAAACTTTTACGTGGAAGAAAAATGCAGAACGACATACCAAGATTCATACTGGCAGTTATCCATTTGAGTGTGAAGAATGTGGACGTCGGTTTCAACGAAAGGATAAATATGGCGAACATATAAAAACTCATGCTAATAAGGATCAAAATGCTGTGCCAACAGAACGAGCTGAGGATGAAGAAATGGACCTAGAATCCAAATTACAAGTGGAATTGGAAACGAATGATACAAGTGACGATGAACAAAGCGAGGAAGATATTGAAGAGATCAAAACGAAACGGCGCGGTGGCAGACCTGCAGCATCGAAAAAACCCGAATTCACCTACAACAACGATGATGATCGTTATCATTGCAACAGATGCGATAAAAATTTTGCTTGGAAAAAAGATGTAGAACGTCACATAAAATCCCATTATGGCATATACCCGTATGAGTGTGTCAAATGCGGTCATCGTTTCCAGCGTAAAGACAAATTTGCCGACCATTTGAAGGTGCATGAAAAACAAGAAACGGCTGGTGCGAAACGACCACGCCCAGCACGCACCGAATGGAGTTTCGCTGAATTTTTATACACCGAATCGCCATTCCGTTCGATCGAATGTAAACTTTGCAATGAAACTACTTCAAATTTAGCGGCATTGCGCACACACTTGCAAACACACATACAACCCGATACTATAAATTTAGATGCTGACAGTGAGGTGATAAAAGAGCTGTTCCCCAATTCGAAAGGGGGATTGCATGAAATCAAATTGGAAATATGTAAAGATGTCAGAGAGTCGCGTTACGCTAAATATTATGCTATTATAAATGTCAATGGCTATGAAATGGCGCTAAGCGATTCCGATACCGAACCGAACGGTGGCGATCAACGCGAAAAATACGAATGTGAGATGTGCCATGTAAAAGTGGCACGAAAATATCAATTGTTTCAACATGCCAAAACAGAGCACATGCAGGAGAAGCAACCACACAAATGTAATGTTTGCAAATTGGAAtttgttagtggtgccgtattCGAGCTACATTCACGTACACAATGCCGTAATCGTGATAGGAAATATCAATGTATCAAATGTCCAGGCAAATTTGTGTGGCTGCAAAATCTGCAAGGGCACAACTGTTCCAATCGCTTCAATTTGTATACCACCAACAAGCGAGCCACCGAACAACGCAAAAGTAAACTGCTCAAATGTAATTTCTGTGATAAGACATTCCGTTATGCAACGGATTTGAAACGTCATCAAGAAACACACAATTTGAGTAGCCGTTCGCACATATGTAATCTCTGCAGTCAACCCTTCTTGAAAGCGGAGAACCTGCGCCAGCATATGCGGCAAGCTCATCGAGATTTGGTGAAGCGTTGCATTGAATGTTGTTTGTGTGGTGAAAAGTCCAATACGTTAGCCAAGTTGCGCACTCACTTGCAGGAGCACGCCGATGGGTGGACGGGTATTAGATATAGTGAGGGGCGTTATTTCAAGGTGCATTGGCCGCAGGGTTGCAAGGGTAAAGAGAGTGAGGTGGAGCAAAGTATTGTTATAGATTTTGCTGGGCAAAATTTAACACCCTACTATTTGGCGGTGGATGAGAGTGGCAACGAAATGGATTTGTATGATTCGGAAACGGATCTAGAAGAATTGGAAAGCATGACTACGTCGACAATATTGCAACAACCagagcaacagcagcaacagcaacaacaacaacaacaaaccacCCAATCCGCATCTTACACATGTGATTTGTGCAATGAAGTATTCTTCCGACGCATACGCATACTCCAGCATCAGCATAGCGCGCATGCCGGTGAAGCCGAATCCCTGCCGCACGCTTGTGGCCGTTGCGACAAACAGTACGTGTGCTTGGGCCTGCTGGAACAGCATTACAAACGCGATTGCGGTAATATATATAAACAATTCGATTGTAAGCGTTGTTCGGCGCGTTTTGTTTGGGAGGAGAATCTGAAAATGCATATGCAGCGCCAACACATCGATCCAGAACAGCAAATAAGTCGTCAATTGGCCAATAAGTTACAGTGTGATCAATGTAATAAAGTATTTGTTTGGCCTAAAGATTTGACGCGTCACAAACGTATACATATGCCCGACGATGAGAAGTTCGAATGTCCGTATTGTGAGCGGAAATTCTACCGGAAAGATCATTTGCAAACACACTTAAAAGTGCATGGCGTTTCGGGTAACATGGCAGCGGCCACAACAACGGCGGCAGCTAATAAACGTGAACTGAATCGTAAAGTGACCGCTGTTGATCCACATCTCTGCAAACCAAATGGCCTGAAATGTGTACAGTGTAAAATTTGCCTATCCAAACATACCAAAATCGCTGATCTCCGCGCCCATCTATTGGAGCATCGTAGCGATGTCTCGCTGTCACAACATGTTACCACTAATTCCGAAATATCATTACTCTTTTATCCCGACGAAGCGCCAATGAGTAGAGAGCTGCTAATAGCCCGAATGATTGCCGATATCACTGCCGGGCAGTTGGATCGTTTCTATTCCATAACAAATGAATTGGGTCACGAACTAAGTATTAGTGGTTCGGATACGGATGACACAGATTCAGATTCAGAAGAAGATGACGAATCCAGTGGAGGCTATAGCAAACTGCATCCCAGACGTTCCACTTACAATTGTGACTTGTGTAGTGTCGCATTTACACGCAAGTATAAACTATTTGCTCATCAGGCGAGCGGCCACATTTGGAATGAGGCTCCTTATGTGTGTCAACATTGCCAAGCGCATTTTCTGTGCGACAAACTATTGCAGTCGCATTATCGGCATCAATGCAAGAATTTGTTGAAACGTTATCTTTGTCGCAAATGTCCGCAGCGTTTTATGTGGAAagaaaatctgaaaatgcattTACGTCAAATGCATCCGGACAGTGATGATGTTAAAAAGGTATTCGCTCTAAGTTCGTATGACTGTGAAGTCTGCAGGCGTAGCTTCCAAATGCAAAAAGATCTGGCACGTCACATGCTTACCCATCGTGCCGACGCTCCCATCTTTCCGTGTATGTGGTGTCCTCGCAAATTTTTCCGTCGCAGCAATTTGTTATTGCATATCAAACGTCATGGCATCACATCACATCAGCTGAGTGCTGCTGCTGCTAATATCGCTGCCGGCAAAGGGCCGAACGGAAAAAAGGAAATTCACTGCCGTGTATGCAATATGCAATTTAATAGCATATCCGCATTACGCACTCATCTGCGCCAAGAGACGTCAGGCAATCTGTCGTCCCATCACAATTACAATTCACCACAAAATTATTCGATAATGAATGAACTTGGTTTTGAATTGGATATGAATGATTCGGAGACAGATGTCGGTGACGAAGAGGAGGAAGAGGCAACACCGGCTAAATCATACAAATGTCAAATGTGTGGACTTGTCTGCAAGAGGCGCTATCAGATGAGTCAACACCAATTGTCGATGCACAAACATGAACATATCATTTTGAAATGTGATAAATGTGTCTTTCGAACGGTTTCGAGCAACATTATGGACCATCACATGCGCACACAATGCAAGAACACAGAAAAACGGCATCAATGCCCCCAATGCGCCTACAAATTTATGTGGCCGGAAAATTTGGATATACATATTAAATTGGTACATCCACAAATTCCCGAACAGTCGTctgaagcaacaacaacaaccaacgcAGAAACAGTGGCAGCGTCCAACACAGATGATCCGGCATTACACAGCATACCCGCGCCGTTACAAGAATTCCAATGCGATAAATGTGCACGTCGTTATAATCGTAAAGATCGGCTGATtgcacatatgaaaaaattgcatgGCCACCAAGCTGGCGGCGATGACGCAAATTCCAGTAGCACGAGTACTGCCGTTGCCGCAGCCGCAACTTCAGCTAAGGCAGCTGCGAGCGGTTTAAAGCGATTGCCGAAAGAGAAACAATTCCTTTGTGCATTTTGTGGGCGTGCGGTGAGTTCTTCGTCAAATTTGATTGTTCATATGCGTCGTCACACAGGCGAGAAGCCATTCCAATGTGAGTATTGCGATAAGGCCTTTCCTCGCTCGTCCGATTTGGCTTGCCATCGCCGTACGCACACCGGCGAGAAACCTCATAATTGTACCGTTTGTAATAAGTCATTTTCACGTTCGTATAAATTGTCCGTCCACATGCGTATACATTCCGGCGAAAGGCCATACAACTGCACGTTCTGCGAGAAGAGTTTCACACAATCGAATGATTTGGCATTGCATATACGTCGTCATACCGGCGAACGTCCATATGTTTGTAACGTTTGTGGTGAAAATTTTATTCAAGGTACAGCCCTGAAGCATCATCGTATAGCACGTAATCATATGCCTGATGATCATGAGCTTTTGCAGTTGGATGAAGATGGTAATAGTTTAATTCAATTGTGA
Protein Sequence
MVSYQCRTCRKKINDRYNLLTDILDEEHKPRKTLADFLWDIAKINNKTEDAKRLPQQICRACFRKLKNTHLFIVQAQVANKKLFASLYIGKAEFSSVPKKSSNDCLLEAPIDIPIEQVEIKKENDDGVAVAVGRKEQSPECKDANTSMEKSDDGIGEMGETESALAVKEESMEIQKDEKDGDTEFLDESMAVDPITTVETNEEDKVAKSAEENANDTDTSDSDAIPLIKRRRGVTTKSAYDITYNDNDGKFHCNNCDKTFTWKKNAERHTKIHTGSYPFECEECGRRFQRKDKYGEHIKTHANKDQNAVPTERAEDEEMDLESKLQVELETNDTSDDEQSEEDIEEIKTKRRGGRPAASKKPEFTYNNDDDRYHCNRCDKNFAWKKDVERHIKSHYGIYPYECVKCGHRFQRKDKFADHLKVHEKQETAGAKRPRPARTEWSFAEFLYTESPFRSIECKLCNETTSNLAALRTHLQTHIQPDTINLDADSEVIKELFPNSKGGLHEIKLEICKDVRESRYAKYYAIINVNGYEMALSDSDTEPNGGDQREKYECEMCHVKVARKYQLFQHAKTEHMQEKQPHKCNVCKLEFVSGAVFELHSRTQCRNRDRKYQCIKCPGKFVWLQNLQGHNCSNRFNLYTTNKRATEQRKSKLLKCNFCDKTFRYATDLKRHQETHNLSSRSHICNLCSQPFLKAENLRQHMRQAHRDLVKRCIECCLCGEKSNTLAKLRTHLQEHADGWTGIRYSEGRYFKVHWPQGCKGKESEVEQSIVIDFAGQNLTPYYLAVDESGNEMDLYDSETDLEELESMTTSTILQQPEQQQQQQQQQQQTTQSASYTCDLCNEVFFRRIRILQHQHSAHAGEAESLPHACGRCDKQYVCLGLLEQHYKRDCGNIYKQFDCKRCSARFVWEENLKMHMQRQHIDPEQQISRQLANKLQCDQCNKVFVWPKDLTRHKRIHMPDDEKFECPYCERKFYRKDHLQTHLKVHGVSGNMAAATTTAAANKRELNRKVTAVDPHLCKPNGLKCVQCKICLSKHTKIADLRAHLLEHRSDVSLSQHVTTNSEISLLFYPDEAPMSRELLIARMIADITAGQLDRFYSITNELGHELSISGSDTDDTDSDSEEDDESSGGYSKLHPRRSTYNCDLCSVAFTRKYKLFAHQASGHIWNEAPYVCQHCQAHFLCDKLLQSHYRHQCKNLLKRYLCRKCPQRFMWKENLKMHLRQMHPDSDDVKKVFALSSYDCEVCRRSFQMQKDLARHMLTHRADAPIFPCMWCPRKFFRRSNLLLHIKRHGITSHQLSAAAANIAAGKGPNGKKEIHCRVCNMQFNSISALRTHLRQETSGNLSSHHNYNSPQNYSIMNELGFELDMNDSETDVGDEEEEEATPAKSYKCQMCGLVCKRRYQMSQHQLSMHKHEHIILKCDKCVFRTVSSNIMDHHMRTQCKNTEKRHQCPQCAYKFMWPENLDIHIKLVHPQIPEQSSEATTTTNAETVAASNTDDPALHSIPAPLQEFQCDKCARRYNRKDRLIAHMKKLHGHQAGGDDANSSSTSTAVAAAATSAKAAASGLKRLPKEKQFLCAFCGRAVSSSSNLIVHMRRHTGEKPFQCEYCDKAFPRSSDLACHRRTHTGEKPHNCTVCNKSFSRSYKLSVHMRIHSGERPYNCTFCEKSFTQSNDLALHIRRHTGERPYVCNVCGENFIQGTALKHHRIARNHMPDDHELLQLDEDGNSLIQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-