Ucar032907.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482674.1:17833228-17846137[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.1e-05 0.008 17.9 1.7 1 23 570 592 570 592 0.97 2 18 1.9e-05 0.0025 19.5 0.4 1 23 598 620 598 620 0.97 3 18 0.0016 0.21 13.4 0.5 1 23 626 648 626 648 0.95 4 18 3e-05 0.004 18.8 3.1 1 23 654 676 654 676 0.97 5 18 6.9e-05 0.0091 17.7 4.7 1 23 682 704 682 704 0.99 6 18 0.00013 0.017 16.9 5.7 1 23 710 732 710 732 0.97 7 18 6.2e-07 8.2e-05 24.2 4.3 1 23 738 760 738 760 0.98 8 18 2.2e-07 2.9e-05 25.6 2.4 1 23 766 788 766 788 0.97 9 18 0.00013 0.017 16.9 6.7 1 23 794 816 794 816 0.97 10 18 3.7e-05 0.0049 18.6 6.5 1 23 822 844 822 844 0.98 11 18 6.3e-06 0.00083 21.0 4.5 1 23 850 872 850 872 0.98 12 18 2.3e-05 0.0031 19.2 7.1 1 23 878 900 878 900 0.98 13 18 1.2e-05 0.0016 20.1 7.6 1 23 906 928 906 928 0.97 14 18 1.3e-06 0.00018 23.1 7.7 1 23 934 956 934 956 0.98 15 18 0.00041 0.055 15.3 9.5 1 23 962 985 962 985 0.95 16 18 0.00035 0.046 15.5 0.5 1 23 991 1013 991 1013 0.97 17 18 0.0016 0.21 13.5 4.4 1 23 1023 1045 1023 1045 0.98 18 18 1.8e-05 0.0024 19.5 1.6 1 23 1051 1074 1051 1074 0.96
Sequence Information
- Coding Sequence
- ATGTTGCAGCAACAACCTATACCTGCACAGCAACAAATAACAGCAAGTCAAGTACAGCATAGCAGCGCAGCAATGTCAATGAATAGCGGTGGTGGCGGTGGCGGTAGTGGTGGTAATGTTGCTAGTGGTGTAAATACTGAACGCGTTGGCAATGTAGGCAATGGCAATATCACGATCAGAAAAGGTGCTACCACCACCTTATTAGCAGCCAATACCATTCTAGGTGGTGTAATAGGAGATGCAGGTGGAAATGTCACTGGAAGTGGAAGTTTTAGTGGTAATGGTGGTATAGTTGGCGTTGCTAACAATTCCAATTTAGTTGCCATAGAAACTGTAATGACAGGTAATCCAATCACTGTAACTGCAACAGGCGATAATGCAACGGCTGTCACCATAAACGAGGCTGGTGTTGGTGGTGCTGCTACAACAATGAACGTTGGGGGACTTAATGTGAGGGTAACGAATCCACCACCACTAGTATCAGCGGCAGTGACTGCAGCCACTACAAGCAATTTAAATATCGCAATGCCAAAATTAAcactacagcaacaacaacaacaatcaacaGTGGTAActgtagcagcagcagcacctACAACAGCAGCAACACTTGTACCGAGTAGCTCAAATTTGAGCAAATATTGGCTTGTATCGAACGGTCAAGCGCTGCCCTATAACATTTTACCTAACGGTACAATTATTACACCACAGCAGCGACAACAAACGACTGAGCCCAATACACATGCTCAGCAGCAACAACAGGTACAACAACAAGTGCAACAACAAGCAgcacagcagcagcagcagcagcaacaacaacagcaacaagcCAATGCCTTACAATTACATGCTGCCATAAATGCAAGCGCTgataatcaacaacaacagcagcagcagcagcaacaacaacaacaacaacagcatgtATCTCAACAGCAACATttagctgctgctgctgctgctttgtCGCAGGCACAGCAACAACCACAAtctcaacaacaacagcaacatccGCAACAACAATTACTACAACGCGAAGCTATCAAGGAGGAGAAACCATTTTTAGATAACGGCAAACTAAGTCAAACACTCGCCGCCATGCAACACGTTGGCGCATCGACATCATCCGCTGCTACCACATCCGGCGCCACCACCATCACCCTGGGTGCACCGAAAACTGAAATCAAGGATGATGTTGTTATGGGCAAACCGCCACCCGGCATTGAAATGTATAAAGTTAACATTGAAGACATCTCACAGCTTTTCACGTATCACGAGGTGTTTGGTAAAATACACGGTGATGTTATGAATCAACAATTGGCTGCACATGCAAATGCAGTGCCAAATGCCGCCACAGGCGGTGCACCGCCACCACCGCACAGCAATGCCAGCAATAATGCTGCCGTAGCGGCTGTGATGGCTAGTGCTAAtgcggctgctgctgctgctgcggcGGCGGCTGCTGCAGCGAATACGACAGCCGGTGTTACGCAACCAGCAGCACCATccaccacaacaacaaccaatTTAACAACTGCAAACAGCACAAGCGGCACAACAACAGCACCAGCCACTGCTGTAACAGACACAAAACATAATGTGACGGGCGAATTGTTGATGCCCAAAATGGAGGGTGGCCTGCCGAATGTGGATCAAGCAAACACAATTACGTTGGCACCCGACGGCACACCCATTGCTACTGGCACACATGTTTGCGATATTTGTggcaaaatatttcaatttcgCTATCAACTAATTGTACATAGACGTTATCACAGCGAACGTAAACCTTTTAATTGTCAAGTATGTGGACAAGGTTTTACCACTTCACAGGATTTAACACGTCATGGTAAAATACATATTGGTGGACCAATGTTTACATGTATCGTTTGCTTCAATGTTTTCGCCAATAATGCCAGTTTGGAGCGTCACATGAAACGGCATTCAACCGATAAGCCATTCGCCTGTACTATTTGTCAGAAAACGTTTGCACGTAAAGAACATTTGGATAATCATTTTCGTTCGCATACGGGCGAAACGCCATTCCGGTGCCAATATTGTGCTAAGACATTTACACGCAAGGAGCACATGGTGAATCATGTGCGCAAACATACGGGTGAGACGCCACATCGTTGCGATATATGTAAAAAGTCTTTTACGCGCAAGGAACACTATGTCAACCACTACATGTGGCACACTGGTCAAACGCCACATCAGTGTGATGTTTGTGGCAAAAAGTATACGCGCAAGGAACATTTGGCTAATCACATGCGTTCCCACACTAATGACACACCGTTTAGGTGCGAAATATGCGGCAAGAGTTTCAGTCGCAAAGAGCATTTCACCAATCACATTCTATGGCATACAGGTGAAACACCCCATCGTTGCGATTTCTGTTCGAAAACCTTCACACGCAAGGAACATCTATTAAATCATGTACGTCAACACACTGGCGAATCGCCACATCGTTGTACATATTGTTTGAAGACGTTCACACGTAAGGAACACCTAGTTAACCATATACGGCAGCATACCGGTGAAACGCCCTTCAAATGCACCTACTGCACCAAGGCATTCACACGAAAGGATCACATGGTGAATCATATACGTCAACATACCGGCGAATCACCACACAAATGCACTTATTGCACCAAAACCTTTACACGCAAAGAGCATTTGGTTAATCATGTGCGTCAGCATACCGGTGAATCGCCACATCGTTGCAGTTATTGCAAGAAAACTTTTACACGAAAAGAGCATTTGACGAATCATGTGCGTTTGCATACGGGCGATTCGCCGCACAAGTGCGAATACTGTCAGAAGACATTTACGCGTAAGGAGCACTTGAATAATCATATGCGTCAGCATTCGAGCGATAATCCGCATTGTTGCAATGTTTGCAATAAGCCATTTACACGGAAGGAGCATCTCATCAATCACATGTCGCGTTGCCATACCGGCGATCGGCCATTTGCTTGCGAAACTTGTGGTAAATCGTTTCCACTCAAGGGCAATCTGCTGTTCCATCAACGCAGTCACACCAAGGGACAGGAGTGTGAAAGGCCGTTTTCGTGTGAGAAATGTCCGAAGAATTTTATATGCAAGGGCCATTTAGTATCGCATATGCGTTCACATTCGGGTGAGAAGCCACACGCTTGCACTTTGTGCAGCAAAGCGTTTGTGGAACGCGGCAATTTGAAGCGACACATGAAGATGAATCATCCGGATGCGGTTATGCCACCGCCACCTCAGCCGCATCCGCAAATACCAGCCGGTGTGCTGTCAGCGGTTAAGGAGGAAATTAAGCCAATATTTCTGCCACATCAAACACCAACAATGCACACCATACAACAAATAACAGCCGGCGCTGCTGCGGCTAATGCTGTGCAGCTGGCGCCAAGTTTGGTGCCGTTGGTCTCATCAACAATTACATCGCACAATAACCAGAAGCctcagcaacagcagcagcaacaacaacaacaacagcagcaacaacaacagcaagtgCAACAGGCACatcaacaacaccaacaacaagtgcagcagcagcagcaacaacaacaacagcaacagcaagtACAACAAGCacatcaacagcaacaacaacaattgcagcaacaacagcagcagctaTTGCAGCTATCCATACAGCATCAACAACAGCAGGCACAAGAACAGCATCGCCaacatcagcaacaacaacaacagcaagtgCAACAGgcacatcaacaacaacaacaccaacaacaacaacaagcgcaACAAGCGCATGCGCCACAAGCGCAACCCCAACAGCCACAACAGCAACCACCATCAATGCCCATTGCTTTAATACAAACCGATCCGAGCGTTTTGGCACGCGCTGCCATGCAATTGCAACATTTACCAGCAAATGTTGAGCAACATCCGGTGGTTTACTAA
- Protein Sequence
- MLQQQPIPAQQQITASQVQHSSAAMSMNSGGGGGGSGGNVASGVNTERVGNVGNGNITIRKGATTTLLAANTILGGVIGDAGGNVTGSGSFSGNGGIVGVANNSNLVAIETVMTGNPITVTATGDNATAVTINEAGVGGAATTMNVGGLNVRVTNPPPLVSAAVTAATTSNLNIAMPKLTLQQQQQQSTVVTVAAAAPTTAATLVPSSSNLSKYWLVSNGQALPYNILPNGTIITPQQRQQTTEPNTHAQQQQQVQQQVQQQAAQQQQQQQQQQQQANALQLHAAINASADNQQQQQQQQQQQQQQQHVSQQQHLAAAAAALSQAQQQPQSQQQQQHPQQQLLQREAIKEEKPFLDNGKLSQTLAAMQHVGASTSSAATTSGATTITLGAPKTEIKDDVVMGKPPPGIEMYKVNIEDISQLFTYHEVFGKIHGDVMNQQLAAHANAVPNAATGGAPPPPHSNASNNAAVAAVMASANAAAAAAAAAAAAANTTAGVTQPAAPSTTTTTNLTTANSTSGTTTAPATAVTDTKHNVTGELLMPKMEGGLPNVDQANTITLAPDGTPIATGTHVCDICGKIFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHIGGPMFTCIVCFNVFANNASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGQTPHQCDVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHIRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLVNHVRQHTGESPHRCSYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQECERPFSCEKCPKNFICKGHLVSHMRSHSGEKPHACTLCSKAFVERGNLKRHMKMNHPDAVMPPPPQPHPQIPAGVLSAVKEEIKPIFLPHQTPTMHTIQQITAGAAAANAVQLAPSLVPLVSSTITSHNNQKPQQQQQQQQQQQQQQQQQVQQAHQQHQQQVQQQQQQQQQQQQVQQAHQQQQQQLQQQQQQLLQLSIQHQQQQAQEQHRQHQQQQQQQVQQAHQQQQHQQQQQAQQAHAPQAQPQQPQQQPPSMPIALIQTDPSVLARAAMQLQHLPANVEQHPVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -