Ucar023896.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- SMARCC2
- Assembly
- GCA_960531455.1
- Location
- OY482672.1:133306550-133311101[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 10 2e+04 -2.9 0.3 36 43 205 212 202 214 0.84 2 2 1.2e-14 2.5e-11 44.9 0.2 3 44 658 699 656 701 0.95
Sequence Information
- Coding Sequence
- atgAATATTTTGGGACCGAAGAAGGACGGTGGTCCaaatgttgaattttttcaatCTCCAGAATCGCTGCAAGGATTCGAAACAATTCGTCAATGGCTACAAAAGAATTGTAAAAAATATTTGGCTAATAATACAGAACCGATCACAAAGGAATCATTGGCACAATTAttaatacaatttttgcaaTATGTGGAAGCCAAATTGGGTAAAAATGCACAAGAGCCACCGGCCACTCGCATCCCGATGCGTCTATTCATGGATTTTAAGCCAGGCGGTGGTCTGTGCATCATTTTTAGTACAATGTTTCGCTTTCGTGCCGAACAAAGAGGCAAGAAATTTGATTTTTCTGTTGGTAAAAATCCACCACGCAAAGATCCAAATATACAATTGTTGGTTGATATCGAACAAGCGCTTGTTGAGGCAAATCTCTATCGTATACACTACATTTATATAAGACCCGATGTTAGCAAAGACTTGGCGCAACGTTTGAGGGATATATTGATTACTAGACGTGTAGAGATTGTATTCGACGAGGATGAAGCAACCCATATAATTTACCCAGTAGTTGATCCTCACCCGGATGAGTACGCCCGACCCGTGTTCAAGCGTAACAATCATGTTATGTTACATTGGTATTATTTTCCGGAATCCTATGACACGTGGGCAGCAAATACATTCGATTTGCCAGATAATGTGCCCGAAAATCCTGAGACTTCGGCAGACCGCTGGCTTGTGTCAGCATCTTGGGTGCTAGATTTGGAGCAATATAATGAATGGATGGTTGAAGAGGATTATGAAGTAGATGAGATGGGTAAAAAGAAGACACACAAACATCGTATGTCCGTCGATGACATGATGTCCTTTGGTGCGGATGATAAGAAACGTGCAAGTGCAAGTGGTTCAAGTGCTAAACAAAAGCGCCGTCGTTCACCATCACCAAATACTTCTAAGCCTGGCAAACGTAAGCGCTCACCAGCGGTAATACCCAAGAAATTGCGTAACGACGAGGACGACGAAGACTTGACACGCGACATGGATGATCCACCAACAGAACCAAATATACAAGAGGTGGTCAAGTCATCGTCGCTACAATCGACAGCTAGTCCAGCACCGGGTAGCAAATCGCGTGCTGATAATGATATGATGCCAATTAAAGGTGGCACTATGACCGATTTGGATGATGAAATGACAGGCGGCAGTGCAGTGCAAGCACTTTCCACTGGCGATGGTGAAAATTCACAAACTGGCAAAACAAGTGACAACAGCAATACTCAAGAGTTCTCCTCCTCCGCCAAAGAGGATATGGAAGATAATGTTACCGAACAGACCCATCACATAATTGTACCCTCATATTCGGCATGGTTCGATTATAACTCCATACACGTTATTGAAAAACGTGCAATGTCTGAGTTTTTCAATGGCAAAAATAAGTCTAAAACTCCAGAAATCTACATGGCATATCGTAATTTTATGATTGACACTTACAGATTAAACCCGACCGAGTACTTAACTAGCACTGCTTGCCGCCGCAATCTTGCTGGCGATGTTTGCGCTATTATGCGTGTACACGCATTCCTCGAACAATGGGGTCTAATAAACTATCAAATCGACGCCGAACTACGCCCAACACCAATGGGACCACCACCCACTTCGCATTTCCACATACTATCCGATACACCATCCGGTTTGCAATCGTTGAACCCACAAAAAACACCACAACCCTCCGCCGCTAAAGCTTTACTCGATTTGGACAAACCCAAAGCGATCAAGGAGGGCAAAGAGAGTTCTGTTGAAGGTGATAAaccatcagcagcagcagcggcagcaAGCTTACCTGGTGGCATCAGTATAAAAACCGAAACAGTGGAAAACGGCACAAACATCGCCGGCCAACAATTTGGTCTGAAGCTAGATCAGTATGCAAAGAAACCTGCAGCAATGAAGAATCGTACGGCAGCAAATATGACACGAGAATGGACAGATCAAGAAACCTTGTTGCTATTGGAAGGTTTGGAGATGCATAAGGACgattggaataaggtgtgcgaACATGTTGGTACACGTACACAGGATGAGTGTATACTACACTTTCTGCGTTTGCCCATTGAAGATCCTTATCTGGAGGATGATGGCGGATTTTTGGGACCGCTGGGTTGTCAGCCAATACCATTTAGTAAATCTGGCAATCCGATTATGTCGACAGTTGCATTTTTGGCATCGGTGGTTGATCCGCGCGTAGCTGCAGCAGCCGCAAAGGCTGCCATGGAAGAATTTGCCGCTATAAAGGACGAAGTTCCTGCCACAATAATGGAcaatcacatgaaaaatgttGAAAAAGCTTCAGCTGGTGGCAAATTTAATCCGACCTTTGGTTTAGCCAACAGCGGCATAGCGGGTACTGGCGTTGATAAGGAAGAGGAAGAAGCGCATGCAGCAGGCGCTGGAGCTGGAGCAGCTGCGGGAGCTACAGATGACAAAAAATCGAAGTCAAACGATGCCAATAAGACCGAGAAGAAAACTACGGAGAAAGATAAAGAAAATGAGAGTGAAAATAAAAAGAAAGCAGAGAAAGATTCTAAAAATGGCACCGAAATCAAAAGTGAGGACACTAACGATACCGATACCAATTCCAAAGATGCTACCGATGCTTCAAACAAACAACAAGTATTCAACGAGTCAAATGTACAAACCGCTGCCGCAGCAGCTTTGGCCTCTGCTGCCGTTAAAGCCAAACATTTGGCTGCTTTAGAGGAACGCAAAATCAAATCATTGGTTGCATTGTTGGTCGaaacacaaatgaaaaaattggaaataaaacTGCGTCACTTCGAAGAACTCGAAACAACAATGGAGCGTGAACGTGAAGGTTTAGAATATCAACGCCAACAACTAATTACCGAACGACAACAATTCCATTTGGAGCAATTGAAGGCAGCAGAGTTTCGTGCACGTCAGCAAGCACATCATCGCTTGCAGCAAGAACAGCAATGGCAAGGAGCAAGCGCTGGTGGCGTTGGCGGCGCCGTGAACGCACCAGGTGTTGGTGTCCCACCAACAGGCAATTCCAACGCCAATAATCTTGGTGGTGGCATCAACAATAATGTAGCACCGGCAACGGGCCAAGCGATTGGCGGTGGTGTTTTAGCAGCTGGGGGCGGCGGTGCACCTTCGCCAGCAATGGCAGCCGGAGTTGTAGGGCCACAGGGTGCGATTGCAACCAATCAAGGCGCAACCACAGCACAAAATGCTGCAGTAGTAGGTGGCAATGCACAACAGCaagcaacaacaatagcaaccgCACCACCACCGATGGGCTTACCATCCGTACCATCACCTGCACAGCAGCAGCAACCACCACCAACACCCATGGATACTACACCAGCACCAACACCAAGCTCCTCACACGTTCCTCTGCCGGCAGATGGCGCTACAGTCACTAGCCAAACCATTTTGCCACCACTTAATCCACCTGTGGTGGGCGGCGTTCCCTTAGCAGCAAGCACAAATATGCAATCGACAAATGTACCACCAAACATTCCGCCAATTGGTGCTCCACCAGCAATGCCACCATCTTAA
- Protein Sequence
- MNILGPKKDGGPNVEFFQSPESLQGFETIRQWLQKNCKKYLANNTEPITKESLAQLLIQFLQYVEAKLGKNAQEPPATRIPMRLFMDFKPGGGLCIIFSTMFRFRAEQRGKKFDFSVGKNPPRKDPNIQLLVDIEQALVEANLYRIHYIYIRPDVSKDLAQRLRDILITRRVEIVFDEDEATHIIYPVVDPHPDEYARPVFKRNNHVMLHWYYFPESYDTWAANTFDLPDNVPENPETSADRWLVSASWVLDLEQYNEWMVEEDYEVDEMGKKKTHKHRMSVDDMMSFGADDKKRASASGSSAKQKRRRSPSPNTSKPGKRKRSPAVIPKKLRNDEDDEDLTRDMDDPPTEPNIQEVVKSSSLQSTASPAPGSKSRADNDMMPIKGGTMTDLDDEMTGGSAVQALSTGDGENSQTGKTSDNSNTQEFSSSAKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMSEFFNGKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDAELRPTPMGPPPTSHFHILSDTPSGLQSLNPQKTPQPSAAKALLDLDKPKAIKEGKESSVEGDKPSAAAAAASLPGGISIKTETVENGTNIAGQQFGLKLDQYAKKPAAMKNRTAANMTREWTDQETLLLLEGLEMHKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDNHMKNVEKASAGGKFNPTFGLANSGIAGTGVDKEEEEAHAAGAGAGAAAGATDDKKSKSNDANKTEKKTTEKDKENESENKKKAEKDSKNGTEIKSEDTNDTDTNSKDATDASNKQQVFNESNVQTAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRLQQEQQWQGASAGGVGGAVNAPGVGVPPTGNSNANNLGGGINNNVAPATGQAIGGGVLAAGGGGAPSPAMAAGVVGPQGAIATNQGATTAQNAAVVGGNAQQQATTIATAPPPMGLPSVPSPAQQQQPPPTPMDTTPAPTPSSSHVPLPADGATVTSQTILPPLNPPVVGGVPLAASTNMQSTNVPPNIPPIGAPPAMPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -