Ucar013657.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482671.1:72198322-72200434[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-07 0.00017 22.6 0.0 6 39 20 53 16 57 0.88 2 2 1.7 2.3e+03 -0.3 0.5 7 24 207 225 203 226 0.89
Sequence Information
- Coding Sequence
- atggtACGCAATTACAAAAAGAAATCTAATCGGCATGCTATAAACGAAAATGTTATTAGAAAGGCAATAAGAGATATCAGAAATGGGATTGAAACGCAAACTACAGCAGCCATCAAATACGGAATAAATAGAACAACCCTAATTATGCGTCTTAAAAAGAAAGCGCCTCCAGGAAATCCTTCAGATTCTGGCAATGACAGCACCTCTGAAGGTTCTTTTAACTTTCAATCGAAATACACACCACGCCAGACATTTGATAAAAAACAAGAAAGCGATATTTGTGAATACGTAAAGAAATGTGCTTTTTATTCATACGACTTAACATATCAAGCTTTTAAAAAGTTTGCGTATGATTACGCTAAGGCGAATAACATTGTTGTTCCAACTGCTTGGGAAAAGTCAAAAGAAGCTGGAGAGGGTTGGCTATATGGGTTTCTCAAAAGAAATGATTCTATCTCTCTTCGTAAACCTGAAAAGATTAGTTTGGCAAGGTTACGAGGTTTCACTAAATCAGCAGTGGAAAATTTTTTCACAAACCTTACCACGTTATATGAAAAATACTCATTTCAAGCAAATGATATCTATAATTTGGACGAAACTGGTGTAACTACCGTGATGGAGGCTATTAAGATTTGTGCTGCAAAGGGACAACGTTCGGTTACTCAAGCATCTTCCGCTGAACGTGGCAGCTTGGTTACAATCGTCGGTATAGTTAACGCTTGCGGAAATCGTTTGCCTCCGGCTTATATATTTCCCCGTATACGTTTCAATGAAAGACTCGGAAGTGGATGCATGCCCGGTTCATTGATAATGAATACAAAATCCGGATGGATGATTTCAGAAATCTTTGTAAATGTGCTGAAACACATTCAAAAATTTACGAACTGTTCAACTAAAAACCCAATTCTTATTCTACTTGATAATCATTCGTCACATTGCAGTTTGGAAAGCATTAACTATTGTGCAGAGGCTGGAATTGTATTGCTTTCTTTTCCTCCACATACCTCCCATCGTCTACAACCACTGGATGTATCAATTTTCGGTCCTTTCAAGCAACTTTGCCGCAAGGCCTTTAATGATTTTCTAACCACAAATCCTGGAAAGCAAATCAGTATATACTACATCGGAACATTAACTCAACAACCATTTCAAAGATCTTTTTCTCCCGAAAACATAATGAGCGGATTTAAAGCAACAGGAATTTATCCCCTAAATACCCAAGTTTTCCAAGATGCAACATTTGCGCTGGAGGCTGTATCAGAGGACCAAGCCGAGCTCGTTCTTCCTGAAAGATCAGATGATATGAATTCATCACAAAATGTTACAATGAACACAGAAAGCAACCTTAATAATAACTCACCATGTGCTACGCCAGAATCTGTTAGGCCTATATCGCAACTTCATGCGTCCAAGAAAAATCCAAGAAGCGGAACTTCACGAATTCTTACTTGTTCAACTGAAAAACGAAGGATTGAGCAGCTTACTAtagtgaaaaatttaaatactgCCAAGCGCACTCTAAAGTTTTCACAGAAAAGAACAACGCAGGCAAAAAAGAAGCAACCTAAAAGAAAGCGCCAATTGATCATGGAATCTTCAGACGAAAGTACGATCGACATTAGCTATGCTGAGTCAATTGACTCTAATGGTTTCACTGCTGATGATGAAGGTTACCTTGATCCCCAGGAAGATGATATGCAGATCCAAAAAATAACTGATGATGATAAGTTGACTGTGGGAGACTATGTTCTGGTTAAATTCAAAGAAAACCTCAAAAAGACCGTATTCTATGTTGGTCAAATAATGGAAACTTTTAGCGACTGCACTTATAACATCACCTTTTTCCGAAAGATATCTCCTTCGAGTTTGGTCTTTGTTAAACCTGAAATAGAAGATTTGGCCATAGTTATGCGCAGCGAAATAGAGTTAAAGTTGCCAGTGCCTGAGAATCCTGCGTCAACTTCACGTTGTCGGACGAAATATATTTTTAACCAGGAGTTATCGAActattatataaaataa
- Protein Sequence
- MVRNYKKKSNRHAINENVIRKAIRDIRNGIETQTTAAIKYGINRTTLIMRLKKKAPPGNPSDSGNDSTSEGSFNFQSKYTPRQTFDKKQESDICEYVKKCAFYSYDLTYQAFKKFAYDYAKANNIVVPTAWEKSKEAGEGWLYGFLKRNDSISLRKPEKISLARLRGFTKSAVENFFTNLTTLYEKYSFQANDIYNLDETGVTTVMEAIKICAAKGQRSVTQASSAERGSLVTIVGIVNACGNRLPPAYIFPRIRFNERLGSGCMPGSLIMNTKSGWMISEIFVNVLKHIQKFTNCSTKNPILILLDNHSSHCSLESINYCAEAGIVLLSFPPHTSHRLQPLDVSIFGPFKQLCRKAFNDFLTTNPGKQISIYYIGTLTQQPFQRSFSPENIMSGFKATGIYPLNTQVFQDATFALEAVSEDQAELVLPERSDDMNSSQNVTMNTESNLNNNSPCATPESVRPISQLHASKKNPRSGTSRILTCSTEKRRIEQLTIVKNLNTAKRTLKFSQKRTTQAKKKQPKRKRQLIMESSDESTIDISYAESIDSNGFTADDEGYLDPQEDDMQIQKITDDDKLTVGDYVLVKFKENLKKTVFYVGQIMETFSDCTYNITFFRKISPSSLVFVKPEIEDLAIVMRSEIELKLPVPENPASTSRCRTKYIFNQELSNYYIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992520;
- 90% Identity
- -
- 80% Identity
- -