Ucar023258.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- cbh2
- Assembly
- GCA_960531455.1
- Location
- OY482672.1:120372544-120374703[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-08 6.5e-05 23.9 0.0 2 39 16 53 15 57 0.90 2 2 3 4.2e+03 -1.1 0.1 25 36 103 114 102 116 0.86
Sequence Information
- Coding Sequence
- ATGGTTAGAAATTATAAAAGGAAAACACATCGAGACCCAATTAATGAAGAAAGTATGAAAAAAGCCATATCGGATGTAAAAAAAGGAGTCGAGACACAAACTTCAGCAGCAGAAAAGTACGGTGTAAATAGAACGACACTTCTAATGCGTATGAAACGTCAAGATCCACTACGATGTTCGGCGGACTCTGGCAATAGTGATTCCGATGATGCATTTTTGTATCAGTCCAAATATTCATCGCGCCAAATTTTTACAAAAGAAAGTGAAGAGGAATTGGTAGAATATGTAAAGAAATGTGCCTTTTACGCGTATGGCTTGTCATATCAGACATTTAGGAAATTTGTATATGATTAtgcaaaaattaatcaaatcaCCATTCCTGTTGGATGGGATGACCACAAAGAAGCTACTTGGGACTGGCTTTATGGTTTTCTTAAAAGAAACCAAAACATTTCATTACGAAAGGCAGAGAAAGTAAGTTTGGCCAGACTTCGGGGCTTTACAAAATCAGCAGTGGATGGATTTTACTCAAATCTTAGGAATGTATATGCAAAATACTCTTTCCAGCCCAAAGATATATATAATTTAGATGAGACTGGAGTAACTACGGTCCTAGAACCGCCTAAGATTCTGGCTCAAAAAGGACAGCGCGGGGTTTTACAAGCAACATCAGCAGAGCGGGGAAGCCTAGTCACTATGGTTGGGATTGTGAGTGCCAGTGGAAACCATTTGCCTCCAGTTTATGTGTTTCCTCGTATAAGATTCACCGACAGATTTTTAAATGGATGTTTCCCGGGTTCAAAGGCTCTGAATTCAAAATCTGGTTGGATGACTGCAGAACTATTCATCGATGTAGTCAAACATATAAAACACAACACTAATTGTTCGAACGATAAACCCATTCTCCTTTTATTAGATAATCATACATCGCATTGTAGCCTTGAAAGTATTAACTTTTGCAGAGATAATGGAATTGTGATGCTATCCTTTCCACCTCATACCTCGCACCGTTTGCAGCCATTAGATGTGTCTATATTCGGGCCATTTAAACAATTTTGTCGGAAGAGTTTCAATGACTTTACTACATTAAACTGCGGAAAACAAATAACTATTTACGATGTGGCAAAATTAACCAACCATCCTTTCCAAAGGTCATTCTCGTCGGAAAATATACTAAATGGGTTTAGGAGCACAGGTATTTTCCCCTTTAACTCCGTAATGTTTAGTGACGACGAGTTTACTTTGGAAACTTTGCCGGAAGATGAAACTCTTCCTGTTGTTAATGCCAGTGAAAACGTGGAAAATATACTCAATATCCAAGAAAGACAACAAAGCTCTCCAGTGCAAATCCGTACTCCTGAAATGATAAGACCAATCAAACGTTTGTGTGCCTCTAAGAAAACGGCCAGAAGCTCAACATCACGTATCATAACGAGTTCAACTGAAAAAGAAAAGGTGATGGAACAAAACAAAAGACAAACAATTCGCAACGTAAAGCGAGCTATTATATTTtcatcaaaaaataaaagaacaATACGAGTATTAAAGAAAAAACCTAAAAAAATGGACATACCTGAATCTGAAACGACTGAAGGAAGTGACGAAAACATTTCATACAGTGAGTCCATTAACTCTATTGGTCCCATTTCTGACGACGAAGGAAATTATGACACAGAAGATAACGATTTATCTAAATGGAAATTAACCGACGAAGATATTCTAGATATAGGAGATTACGTTTTGGTTAAATTTGCTcctaaaaaacaaaaaccattCTACTATATTGGTGAAATAATAGAAAAGTTCAGTAGCAATGTTTTCAACATAAACTATTTACGACGATCGTCACCATCAAGCTGGATTTTTGTAAGACCCGAAGTAGAAGATATTGCTTTAACTTTAAGATGTGACATTGAATTAAAACTGCCAAAACCAGATAATCCAGCTAGCACATCTCGATGCCGCACAAAATATTTGTTCGATGTAAACTTTGGAGAATTCTATATTAAATAA
- Protein Sequence
- MVRNYKRKTHRDPINEESMKKAISDVKKGVETQTSAAEKYGVNRTTLLMRMKRQDPLRCSADSGNSDSDDAFLYQSKYSSRQIFTKESEEELVEYVKKCAFYAYGLSYQTFRKFVYDYAKINQITIPVGWDDHKEATWDWLYGFLKRNQNISLRKAEKVSLARLRGFTKSAVDGFYSNLRNVYAKYSFQPKDIYNLDETGVTTVLEPPKILAQKGQRGVLQATSAERGSLVTMVGIVSASGNHLPPVYVFPRIRFTDRFLNGCFPGSKALNSKSGWMTAELFIDVVKHIKHNTNCSNDKPILLLLDNHTSHCSLESINFCRDNGIVMLSFPPHTSHRLQPLDVSIFGPFKQFCRKSFNDFTTLNCGKQITIYDVAKLTNHPFQRSFSSENILNGFRSTGIFPFNSVMFSDDEFTLETLPEDETLPVVNASENVENILNIQERQQSSPVQIRTPEMIRPIKRLCASKKTARSSTSRIITSSTEKEKVMEQNKRQTIRNVKRAIIFSSKNKRTIRVLKKKPKKMDIPESETTEGSDENISYSESINSIGPISDDEGNYDTEDNDLSKWKLTDEDILDIGDYVLVKFAPKKQKPFYYIGEIIEKFSSNVFNINYLRRSSPSSWIFVRPEVEDIALTLRCDIELKLPKPDNPASTSRCRTKYLFDVNFGEFYIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -