Ucar003463.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- clz9_1
- Assembly
- GCA_960531455.1
- Location
- OY482670.1:57248187-57250130[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-10 4.2e-07 30.9 0.0 1 40 7 47 7 49 0.93
Sequence Information
- Coding Sequence
- atgCCAAAAGCTCGTTACACAAAAGAAGATTTGACAGCAGCGCTTAATGGTGTCACTaatgaaaaattaagtatttaTAAAGCTGCAAAACTTTATAAAATTCCTGAACAGACTCTTAGAGATAAAATATTTGATAGGCATAAGAAACCGTTAGGGAAACCAACAGTTTTGACTGCCATAGAAGAAGAAATGCTGGTTAAATGGGTAAAGACAGTTGCTGAGTGTGGGTTTGCAGTCAGTAAGGATCAACTTCTTTTTTCGGTTGGTAGACTAGCAAAAGAAATTGACCGAAAAAATGATTTCACTAATGGTGTACCTGGGAGACGTTGGTATGAAGGCTTTTTAAAGCGAAATCCATCAATATCTCTCAGGATGGCTCAGCCACTTACAACAGAACGCATCGGAGCAACCGAGGAAAAAATTAGAGGTTGGTTTGACAGGGTCTTACGTTATTTACAAGAACATAATGAAGTGGATATTCTAAATGACCCAACGAGAATATTCAACTGCGACGAGTCCGCATTTTTTATGTGCCCAAAAGATCAGAAGGTTTTGACGCACAAAGGTGCCAAAACTGTTTATATTAATTCAGGGAATGACGAAAAAGAAAACCTGACCTTGCTTTTGGGAGCCTCTGCAAGTGGAAAAATAATGCCGATTTTCGCATTGTTTCCTTATAAACGCATGCCTCAAAACATTTTGGATAAATACCCAAAAGACTGGGCCATTGGTAAGTCCGACAATGGTTGGATGACTTGTGAAACGTTTTACGAGTATATGACGAATGTATTTTACCAATATTtggtaaaagagaaaattaagCTGCCAGTGATACTTTTCATGGACGGCCACTCGTCCCATTTGTCACTTGCATTAAGCGAATTTTGCAAAGATAAGGGAATCATTTTAATTGCTTTGCCACCTAATTCTACTCATATTTTGCAGCCGATGGACGTAGCTGTTTTCCATCCTCTTAAAGTAGCCTGGAAGAAAAGAATCCACGACTGGAGAGTACAGAACGGTGGAAGTCGTATTAAGCGAGAAGAATTTGCGCCGCTTCTGCAGGAATGCATTTACGCAGTAAAAAAGGAAACTATAAAGCAGGGTTTTAAAGCTTGTGGACTTTACCCATTTCGTCCTGATGCTCCAAACTACCAACGGCTTGTCAAACCACATGCTAGTGAGACCTCGGTAGCCTTGCCAGATGCTCTCAATGACACTAACTCTCCAGATACCCCAGGCGAGGAATTTATACTTCAATTTGAGAAGCTCGTAGGTAGTCCAAAAATAACGTCGTTTCAAGAAAGCGAAGATCAGGTATGGCTGGGTGACATAAAAGATGAAAATCTGTTTCACTTTTGGAGAAAAATACGCAATAAAAGGGGAGAAAATGTTAATAACAGCTTGAACTTTAGTGCCAATACACTCGCGGCTAACAACGTCCTAGATGCCTCCCTTGAACTACAGATCTCTGATTTGCTAAACATGGAGAAGGGTTCATTTGAGATTTTCACACTACAGCCTGATGGTTCATTGATTAGCTCGACTCCCAAAGATAAACCATACTCAAATCTGGCAACTGAGCAAGGAAGAACTATCAATGAACAGAGTCCTGAAAATAGTGAGTATGCTTTATGCGAGGATGCTGTGGCACAACCAAGTTCTAGTCACAATGCTAATAATAACGATGATAGAAAAGCAGGGTTTCCAACCCCGTTCAAGAATGCCTTATTGTGGCCCCAAACACCTACAGGATATGTggcaaaaacaaatgtgaaaaggGTAACACCCACAGTGGCCATAGCTTCAGACTTCATCGAACATCAGCGCCGTGtcgaagaagaaaagaaaatcAAATTAGAAAAAACTTTACAGAGACGGGAAAAGAAGAGCCAAGTTAGCCGACCCAagcaaacacaaacaaaattcaataaaaacaagtaa
- Protein Sequence
- MPKARYTKEDLTAALNGVTNEKLSIYKAAKLYKIPEQTLRDKIFDRHKKPLGKPTVLTAIEEEMLVKWVKTVAECGFAVSKDQLLFSVGRLAKEIDRKNDFTNGVPGRRWYEGFLKRNPSISLRMAQPLTTERIGATEEKIRGWFDRVLRYLQEHNEVDILNDPTRIFNCDESAFFMCPKDQKVLTHKGAKTVYINSGNDEKENLTLLLGASASGKIMPIFALFPYKRMPQNILDKYPKDWAIGKSDNGWMTCETFYEYMTNVFYQYLVKEKIKLPVILFMDGHSSHLSLALSEFCKDKGIILIALPPNSTHILQPMDVAVFHPLKVAWKKRIHDWRVQNGGSRIKREEFAPLLQECIYAVKKETIKQGFKACGLYPFRPDAPNYQRLVKPHASETSVALPDALNDTNSPDTPGEEFILQFEKLVGSPKITSFQESEDQVWLGDIKDENLFHFWRKIRNKRGENVNNSLNFSANTLAANNVLDASLELQISDLLNMEKGSFEIFTLQPDGSLISSTPKDKPYSNLATEQGRTINEQSPENSEYALCEDAVAQPSSSHNANNNDDRKAGFPTPFKNALLWPQTPTGYVAKTNVKRVTPTVAIASDFIEHQRRVEEEKKIKLEKTLQRREKKSQVSRPKQTQTKFNKNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992495; iTF_00992496;
- 90% Identity
- -
- 80% Identity
- -