Ucar015316.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- -
- Assembly
- GCA_960531455.1
- Location
- OY482671.1:109632260-109634164[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.6e-09 6.4e-06 27.1 0.2 3 45 344 386 342 386 0.93 2 3 2.6 3.6e+03 -0.9 0.0 28 37 416 425 407 427 0.82 3 3 1.8e-07 0.00024 22.1 0.0 13 40 464 490 457 494 0.81
Sequence Information
- Coding Sequence
- ATGATTGATAATGAGAATATTGTTGGCGGAGACAAAGCGATAAGTAATCAATACCATCAcaacatctacaaaaattttgtcgccgacgacgacgacgacgacggaGAACACCGCAATGATGATGAAGATACAGATGAAACAGATGAAAAAGAGAATATACAATTACAAACAAATTTATTAAATAACcataacaacaataaaaacaaatcattaaatcaaaattttgtaagggagaacaacaacaacaacaacaacaacaataaagtcttagcagcagcagcagcagcagccataTCGCCACGCAAAGATTGCCGCCCAACaacaaaaatgcaaacaaatgaAACAACAAAATTGGCGTATAATAACGATAGTGGTGGAGGTGGTGTTGGTGGTGGAGTTCTCGTGCTAAAACATTACGATGATcaacattttcattttgaatttgtGCCACCACCAACTTTTAAGCTCGAATTGCTTGCTGAGAATCAGTTAAAGCGTGTAAATATACCGActaccacaacaacaacaaacaccacaacaacaacgacGGTGCCGATGCCGGTGCctataaatgttaaaaatgaATTAGTGTTGCCGTTACCGAAAATTGAAAATGAGACAAAAGCAAATCTAAAATTGAGACATGAATACAAGGATGCAGCGCCGTCGCAAACCAACCGAAGTCCAGAGGGTGACTTAAATTTTGCCGCTATGGTGGCCGAGGCGTGCGAAGGCATTTTCAACGAAATTGAAAAAGATTTACGTGCATACGATGCTGGAGAAGAAGAAGGCAGAGACGACGAAGCGGATGCTGATGCCGATGCCGATGATGACAACAATGGTAGTTGCCTTGATGAGACTGAGTCCATGCCTGATTTAAGCCATTATAGTACACCAACTACTTCTTCCGCTCCCACGACTCGCAGCACCGCTGCCACTAGTCCAACTAGGAGTATTTACAGTACATACAGTTGTAGTAGTGCAACAACTCCTACTACAAGTAGACGCCACAAGCGTGGACACAATTCGGATGCAGTTAAACTTGCTGCCAATGCTGTGGTGGAAGGCGGCATGAGTTTGGGCGAAGCGGCCAAACGTTTTAGTGTGGTGCGTTCAACGGTGTCATCGCGCGTAGCCAAACATCCCAAATATAAGCGCCGTAAACCGAATAAAGAAATGGATGCATTAATATGTAGTAAATTAAAAGCTGGTCTACAAATTTCAGAAATAGCACGTTCGCTGCATATACCAAAATCGACGGTGCATTCACATAAGactaaattgaaaaatttgggTCAATTGCCGGCGGTGTGGGTGTGGAATGGCAACAGGGATATGGTGGATCATGGCGAGCAGGAACGCTTGAAGCAGGCGTATCGTGGTCATATGGTGAATGGCATGTCTGTACGTTTTGCCGCCGAATTCTTCTCACTGCCGCTAACCACACTATGGCGTTATATAAAGCGAAGAAAAAATGCATTAGCTGTGGCTGTTGCGGCCGAAGCCGCTGCTGAGGGCACTGATGGTGGCGAGGGTGGTGAATATGGTGCtgctgctgatgatgatgatggttaTGATGACGATGAAGTGGAGAATGCCGCTTTTGATGCTGCTGCTGATGTGAAAAAAGAAACCGCCGTTGATGCTGATGCCGCCACATTTGATGATGAAAGCTGCGAACGTGCCTTAGATGATGGCGCAAATGATATAACCCCTGTAAACAACACTCACCACGTTGCTGTAGTGGCAACGTCATGCGAAAGCGCGTATCATATACAGAATCCGCAAAATGATTTTATGCTGCTACAGTGCGAACCAATGCAATGGAACGCTGATATGTTGACAGTTACGGCGAATGAAGAGGAAATGTTTGAGCAAACTTTAATTTATGGACTATTAGAATAG
- Protein Sequence
- MIDNENIVGGDKAISNQYHHNIYKNFVADDDDDDGEHRNDDEDTDETDEKENIQLQTNLLNNHNNNKNKSLNQNFVRENNNNNNNNNKVLAAAAAAAISPRKDCRPTTKMQTNETTKLAYNNDSGGGGVGGGVLVLKHYDDQHFHFEFVPPPTFKLELLAENQLKRVNIPTTTTTTNTTTTTTVPMPVPINVKNELVLPLPKIENETKANLKLRHEYKDAAPSQTNRSPEGDLNFAAMVAEACEGIFNEIEKDLRAYDAGEEEGRDDEADADADADDDNNGSCLDETESMPDLSHYSTPTTSSAPTTRSTAATSPTRSIYSTYSCSSATTPTTSRRHKRGHNSDAVKLAANAVVEGGMSLGEAAKRFSVVRSTVSSRVAKHPKYKRRKPNKEMDALICSKLKAGLQISEIARSLHIPKSTVHSHKTKLKNLGQLPAVWVWNGNRDMVDHGEQERLKQAYRGHMVNGMSVRFAAEFFSLPLTTLWRYIKRRKNALAVAVAAEAAAEGTDGGEGGEYGAAADDDDGYDDDEVENAAFDAAADVKKETAVDADAATFDDESCERALDDGANDITPVNNTHHVAVVATSCESAYHIQNPQNDFMLLQCEPMQWNADMLTVTANEEEMFEQTLIYGLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -