Ucar026372.2
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- bab2
- Assembly
- GCA_960531455.1
- Location
- OY482673.1:23389794-23391669[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-17 2.7e-14 53.9 0.0 1 43 57 100 57 102 0.95
Sequence Information
- Coding Sequence
- ATGATTGAAAGCGGACATCCATGGATGGGCGGTGCCTCAACGTCTTCTGTAACCGCAGATAGTTACCAATATCAATTGCAATCGATGTGGCAAAAATGTTGGAATACAAATCAACAAAATCTCGTACAACAATTGCGATTTCGTGAACGTGGCCCATTGAAGTCGTGGCGTCCCGAGGCAATGGCCGAAGCCATTTTCAGCGTACTGAAGGAGGGTCTATCGCTATCACAGGCTGCACGCAAATACGATATCCCCTATCCCACATTTGTATTGTATGCCAATCGTGTGCATAATATGTTGGGTCCATCGCTGGATGGTGGCACGGATCCACGACCGAAAGCACGCGGTCGACCACAACGTATTTTGTTGGGCATGTGGCCGGAGGAGTTGATACGTTCGGTTATAAAAGCGGTGGTGTTTAGGGATTATCGTGAGATTAAAGAGGATATGGGGCATGTGTATGCCAATGGACAAATGCAAGCGGCCTCACCATTCGGCACTGCTGGCAACGCTGCCGCTGTCGCTGCTGCCGCCAACGGTTATCATAATGCTGCCAAATTGGCTGCACAAAATGCCGCACTCGCACCACCCGATTCGCCAAGCCCACTCTCCACCATGACCGAAACGCTGCGTCGTCAACTAATGTCCCAGCAACAACAATCGCCCATTTCACAAACCATGAATATGTATAAATCGCCAGCGTATTTGCAACGTTCCGAAATCGAAGATCAAGTGAATGCCAAACAGCATGCAGCCGAGGCAGCACGTCGCTCATCGGACAACAGCATGCCCGATTTGAGTGCACTCGGTTTGATGGGTATACCCGGTTTGAATGTGATGCCCGCAGCACAAGCGGCGGCACAACGCGTCAGTCAAATGCATCAGAGTGGTGCCAACTATGCACGGGAACGCGAGCGCGAGCGTGAGAGAGAGCGCGAGCGAGAAAGGGAGCGAGAGCGTGAACGCGAGACGCGCGAACGTGAACGTGAACGAGATCGTGAAATCAAGGAAGCAATGCAAGCGCGCCAGTATGGCAATCAATCGCGTGGTAGCACGAGTGGTGGTAGTGGTGGTGGCGGTGCTAGTGGTAATGCACAAAAGATGCCAACTGCCTCAGCAGGCGCCACCGATACAGCTGCAGCTTATGCGCACTACAAAAACAAGGAACAAGCCGCTAAATAtgttttcaataaaagttttgCCGAGACGTTGCCGCCCGGGATTGACTTTGAAGCGATCGCCAATGGTTTTCTGCAAAAGTCCGTGAATAAGAGTCCGCGTTTTGAGGATTTCTTTCCGACCGAATTCTTTGGTAATGCCGAGAGTGGTGGAGCCAGTGCGGGTGGTGCAGCATATCCACCGACACGCGAATCGCCGCTTATGAAGATTAAATTGGAACAACAGACGAGTGCAGAGGTGCCGCATGAGGATTAG
- Protein Sequence
- MIESGHPWMGGASTSSVTADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSLDGGTDPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEDMGHVYANGQMQAASPFGTAGNAAAVAAAANGYHNAAKLAAQNAALAPPDSPSPLSTMTETLRRQLMSQQQQSPISQTMNMYKSPAYLQRSEIEDQVNAKQHAAEAARRSSDNSMPDLSALGLMGIPGLNVMPAAQAAAQRVSQMHQSGANYARERERERERERERERERERERETRERERERDREIKEAMQARQYGNQSRGSTSGGSGGGGASGNAQKMPTASAGATDTAAAYAHYKNKEQAAKYVFNKSFAETLPPGIDFEAIANGFLQKSVNKSPRFEDFFPTEFFGNAESGGASAGGAAYPPTRESPLMKIKLEQQTSAEVPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992470;
- 90% Identity
- -
- 80% Identity
- -