Ucar002002.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- lov
- Assembly
- GCA_960531455.1
- Location
- OY482670.1:26507855-26527906[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-18 6.2e-15 56.0 0.0 1 44 95 138 95 139 0.95
Sequence Information
- Coding Sequence
- ATGCCAGAAGACAGCATAAATGTTGAGGTTGTGGTGGTGGTGGCGCTGCTGTTGCTGCAGACAAAACTATGCCAACTTTGCGTGTGTATGTTCGGCTTGGACTCACCTCTCGGACTTTTTCCGCCCGGCATCGATCCAGGAAAACTGTATAATCCGCTAATGGATATGTCCGATCCGTGTGGCATGCCAAACGAGCATCCGCGTCCCTTTCTCAAAGGCAAAAAAaTACCACGTCCGAAAGGCCAACATTCAGCGCCACGTGGCGGTCCACCACGCTCCTGGACCAACAACGAACTCACCGAAGCTCTCCAACATGTCTGGAACAAAAAGATGACCACCTCGCAAGCTTCGCGTATCTTCGGCATTCCCTACAACTCTCTGCTAATGTATGTGCGCGGCAAGTATGGCAAAAGCTTAAAGTTGGAGCAGTTGCGCAAAGATTGCATTAGTGGACCACCGCTCGAATTGCTACAGCTGGGTTTAGGTCATGGTGGTGGCAGAagtaagaaaaataaaaatgcgaAAAACAATGCCGCCGGCGATGGCAGCGGTGGCGGCGGCAGCGGCAATGCTCCAAATAACAATCACAACCACATCAACGATTTAGATTTAGGTATACCGTTGCCGGGCATGGTGCCCGGTGGCAATGGACCACGTAGCGCCAGCTCCGAACCGGATTTGATGGGTGGTCCCAATTCACTGTTCGGCCCATTTGGACCGGGCGCTTTCTATCCCGATTTTCCGGGCGGTTTTCCCGGTCTTCCGTTGAGCATGCTCAATCTGCTGCCGCCAACAGATCGACTCGAACCACATGGCTCGGCAATGGCAGCGCTACATCATTTCGGCAGCATGGATGAAGATTGCAAATCGGATCGTTCCAAACATTCGTCATCGCTGGGCGATGATGATTTTATTGGCGGCGTCGGTGGTGGTTGTGGCTTACAACCATTGGCGCTCAATGCGCGTCCGGCGGATAACGATCGGCGCAGCAGCGGCAGTGATATGTTGTCGAGCGGTGGCGGCTCGCTGGGTGCGCCACCACCGCCACCACCACAATCATCGCAATCACAACCACCACTGCCACCGCCGCCGTTGCCGCCACATTCTCAACATCAACCTATGAGCGCTATGGTCGGCGGTGGCCAGCAAAATGGCGTTATGCAAGATTGA
- Protein Sequence
- MPEDSINVEVVVVVALLLLQTKLCQLCVCMFGLDSPLGLFPPGIDPGKLYNPLMDMSDPCGMPNEHPRPFLKGKKIPRPKGQHSAPRGGPPRSWTNNELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPLELLQLGLGHGGGRSKKNKNAKNNAAGDGSGGGGSGNAPNNNHNHINDLDLGIPLPGMVPGGNGPRSASSEPDLMGGPNSLFGPFGPGAFYPDFPGGFPGLPLSMLNLLPPTDRLEPHGSAMAALHHFGSMDEDCKSDRSKHSSSLGDDDFIGGVGGGCGLQPLALNARPADNDRRSSGSDMLSSGGGSLGAPPPPPPQSSQSQPPLPPPPLPPHSQHQPMSAMVGGGQQNGVMQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -