Ucar026763.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- ttk
- Assembly
- GCA_960531455.1
- Location
- OY482673.1:33015190-33023334[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1 1.4e+03 0.4 0.1 15 37 267 290 264 298 0.71 2 2 8.5e-19 1.2e-15 58.3 0.0 2 45 585 629 584 629 0.97
Sequence Information
- Coding Sequence
- ATGTCCGTGCAACAATTTTGTTTGCGGTGGAATAACCACCAGCCCAATTTCATTTCCGTCTGCTCTTCTTTGCTACATAATGGCACGTTGGTGGATGTAACTTTAGCAGCGGAAGGCCGGCAATTGCAAGCACACAAAATTGTACTTTCTGCTTGTAGCTCATATTTTCAAACACTATTTACATCGAATCCATGTCAACATCCGATTGTCATACTAAAAGATGTGCAATATGACGATCTTAAAACTATGGTTGACTTTATGTATTATGGCGAAGTAAATGTATCACAAGAGCAATTGCCACATATTTTGAAAACAGCTGAAATGCTTAAAATTAAAGGACTAGCTGAAATGCCCACCGATCCAGCCAATTTGACAAAATCTGGAAGCAAAAATTCGAATGATCCCGCCGATCTAGTGGGTAGCGGTAGTGCTGGTAGTAATGGACAAAGTAGCAGTGGTGTTGCCAGCGGCGGTTTGGGTAGTAGTGCTTGTGGTAGCATTAATGATGCTCTTTGGGAGCAACAACATCATCATGCTCAACATAATGAAACACAATTTCAGTCTCATCAtcaccaacaacaacagaatAGCCAAACGCAAACTGCACAACAGCAACAGCATCATCAATTAAGGCGTACACCATCGCCACTAGGCGCTGGAGCCTCACCGGCTACTAGGCGAAAACGTCTGAGAAAATCTTCAAACAATGGTTCTGGTGATCGCAACAACTCAGAAGAGCAGCATAATGCTTCATTGGATAGTGGCAATCCAGCTGGCGGCATAAGTCTTACACAAATGGGGCAAATGTCATTTAGCGGTGGTGCGGGTACAATCAGCGGCATACCAACTCACTCGCTACACACAACAAAATTGCTAAAAGAATCGACCAGCACCGATATAGATCATCATCAACATGATGATAGCTTAGATGATGCACATGCGCATATGAACATGCAAATTAAACCAGAAGTTGATATGAATACCGTACAGCAATCAATGCCATTGGATATTTCGGCTGCTACAACCCCTTCTGAACAAGATGCACCAAATTCACAATCATCGCATTCTGGTCTGCAATGGACGGTCGTTGATTCGAACTATTCGCGCTTTTCACTATCAACTTGCCAACCGAATGTGATTGGTAGCGGCGGCGCATCGGGCACCCAACAAGTAAACACATCCAATAATGGCGATCAGCAACACCAACAaaggcaacaacaacagcagcaacacgCGCAGGAGGCTGCCGCACAGCAATCGGCTGCTGGACAACAaacacaacagcaacaacatttTCAACAAATACACTatcaacagcagcaacaacaacagcagcagcaacaacaacagcagcagcagcaacaccaacaacatcagcagcagcagcagcaacagcaacaacaaaatgccgCAACAACATATTCACCACAAATAATAACAGTGAATAGCCTAGTCAGCAATTATGGCAACAATAGCTCAGCAGCAGCACCACAACCAAAACTATCACCAACTTCACCCAACGAATCGAATATGGTACAATCGGTATATAGTCAAGGACCCACACCCATGCAATCGCCTGTACATCCCAACGATGTGACTGGCAAAGCTTCAGGCAGCGGTGGTAGCAATGTCTCAAGTGGTGGTGGCGGTGGCGGCGCCAATAATTCAAATGCTGGCGGCAACACAAACACTGCTGGCAGCGGCGGTGTTAATCAAATAATCAAACGTAAACGTTCGGTCAATCCTCAAGGTGATGAAAACTTTATACGCGCACTCGAAGCAGTACGTTCCGGTGGTATTGGTTTTTGCAAGGCTGCGCGCCTCTACGGCGTCAACAATCGTACACTATGGTTGGAGTATAAGAAACGTGGCTACCCGGTGTCACGGCCCAGCATTAAATCGCGCGTTAAACAAGAACCCGATATGTCACCATCACCCACACCACCGAACGCCGCCGGCGATGATACGACCACCGAAAACTATGAACACCTATCGGCTGCTGTGGCGGCAGCAGCTGCACAATCGGCTGCATTGAATATGCAAATACCACCATCTGCTGAAACGCCAACACCAACGGTGATGTGTGCACCACATCATGCTGGTACCACAGCCACTACTGGCGCTGGTGGTGCACACCCAACAATGGGTGTTATGAACTTTTTAGATCCACGACATATGGACTTTTCGGCGGCTGGCTTGCATACAGTCTCTAGGCAACGCTATATAGATGCGAGTAGTGTGAGTGCGGCTGCTGGTGGTGGTGGAACGATCAATGTGAATCCGGCAACTGCAATGAATCTACAAAGTATTAATTTCAATTCAATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTSNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSGSKNSNDPADLVGSGSAGSNGQSSSGVASGGLGSSACGSINDALWEQQHHHAQHNETQFQSHHHQQQQNSQTQTAQQQQHHQLRRTPSPLGAGASPATRRKRLRKSSNNGSGDRNNSEEQHNASLDSGNPAGGISLTQMGQMSFSGGAGTISGIPTHSLHTTKLLKESTSTDIDHHQHDDSLDDAHAHMNMQIKPEVDMNTVQQSMPLDISAATTPSEQDAPNSQSSHSGLQWTVVDSNYSRFSLSTCQPNVIGSGGASGTQQVNTSNNGDQQHQQRQQQQQQHAQEAAAQQSAAGQQTQQQQHFQQIHYQQQQQQQQQQQQQQQQQHQQHQQQQQQQQQQNAATTYSPQIITVNSLVSNYGNNSSAAAPQPKLSPTSPNESNMVQSVYSQGPTPMQSPVHPNDVTGKASGSGGSNVSSGGGGGGANNSNAGGNTNTAGSGGVNQIIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVKQEPDMSPSPTPPNAAGDDTTTENYEHLSAAVAAAAAQSAALNMQIPPSAETPTPTVMCAPHHAGTTATTGAGGAHPTMGVMNFLDPRHMDFSAAGLHTVSRQRYIDASSVSAAAGGGGTINVNPATAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00081119;
- 90% Identity
- iTF_01505535;
- 80% Identity
- iTF_01505535;