Ucar027247.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- bab2
- Assembly
- GCA_960531455.1
- Location
- OY482673.1:44430617-44432347[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-16 2.8e-13 50.7 0.0 1 44 358 401 358 402 0.96 2 3 0.0098 14 6.9 0.0 23 37 427 441 411 447 0.84 3 3 5.7e-17 7.8e-14 52.4 0.0 3 41 469 507 467 509 0.92
Sequence Information
- Coding Sequence
- ATGAATCACTTGAAATGGATGGGCCATTCGGCAACAATTTTTGATATTCAGCGCAATCTTAGAAATGATGCACAAAGTTGTGAGGTAACACTCGTCGCCAAGGGACATTCAGTGCGGGCACATCGGTTTGTACTCTCATCATGTTCAGATTTGCTGCGCAATCTGTTGGTGGACATACCAATGGGTCAGGAAGCAACAATTGTTGTTCCCGACATTAAGGGTTCGCTGTTGGAGAGTGTACtggcttttatttatgttggtgaaacaagtttaACTTCGACAAATCTGTCGGAGTTCTTGGAAGCCATTAACACTTTGGGAATTAAGTCAGCGATAAGTTTTGAATGTAATAACGCTGCCCTAACGGCTGCAGCGTCGAGTACAACAACGCCAGCAGTACCAGTGAAAACACTGAGCAACATTGAGATGGCGCACGAGGAGCTGATTGACCAACAAGATAATATTGCTGTAGAGAAAATAGAAACTCAAAACGTTATACACGATGAGAGGGAATTGGAATTCTTGGATGTTTACAGTGAAGCTCAACACAACAAAATCACATATTCCATAGAGCACATGCCCGTCGCTAGCACTGCAAATGAGTACATTTTAACTGAAAGTTCAGGCACATTTACATTGACGCAAAACAATAAACTTGAAAATGCTTCCAATTCTGATTCAGAAAAATTGGTTGAAATGGAGGATAATACCGAAGATGGACAAATTATAGAGGAATATAGTAGTACCAGCGCCGATCCTATCATTGAAATTGCAGCAAATCCTGCTAATTCTGCAGCAACAAGCACTCCAAAAGTAGCTACTGTCACCACAAACGGATCTCAAATATCACCACAGAATCAAGCCATCATACAAATCAAAACCAACCATCAACCGAAAGTTAAAACCGTTAAAATAAgaacacaaacacaaacaactGCTACAGAAGCTACGAGCGGCGAAATGCATACCACCAATATGTATACAACATTGGACCCCACTGCAGATCCAATATCGGTGTTGAAGTCTGAAGACCCTTACGTAGAAACATTAGGCCCAGCACCCAGTGGCACAACAGAAGATGCTCTTTACTATGCTGTTCAAGCAGTTATTAATGAGGGTATGAGTTTGCAGAAGGCCGCACAAAAGTATGACCTATCAAAAACAGTGCTTTGGCGAAGGGTACGTAAGCATCCGAATTACATGAAAACCACCCGCGAAAATCCCATACTCACCTTGGCTTGTGAGAGATTGAAAGGCGGCGATTCTTTGAAGAATATTAGCCGTGAATTGGATATACCAATGTCCACACTTCATCGCCACAAAGTACGTTTGGCTCAGCAGGGCCGCTTGCCCGATTATGTTTCATTTAAAAAACGTGATGTTAACTCAAAAATGGAGCTGAAAGATAAATTGAATAAGGCATTGCATGCTTGTGTGCATGAGGGAATGTCACAGAATCATGCAGCGAATTTATTTGAAATACCGAAAAGTACGTTGTGGCGACACTTACAAAAACGTGTAGCTGAAGCAGAATTATCACAGAAACTTGAGCAAGGCGACATCAAAGAGGAAGTTATACTATCCTAA
- Protein Sequence
- MNHLKWMGHSATIFDIQRNLRNDAQSCEVTLVAKGHSVRAHRFVLSSCSDLLRNLLVDIPMGQEATIVVPDIKGSLLESVLAFIYVGETSLTSTNLSEFLEAINTLGIKSAISFECNNAALTAAASSTTTPAVPVKTLSNIEMAHEELIDQQDNIAVEKIETQNVIHDERELEFLDVYSEAQHNKITYSIEHMPVASTANEYILTESSGTFTLTQNNKLENASNSDSEKLVEMEDNTEDGQIIEEYSSTSADPIIEIAANPANSAATSTPKVATVTTNGSQISPQNQAIIQIKTNHQPKVKTVKIRTQTQTTATEATSGEMHTTNMYTTLDPTADPISVLKSEDPYVETLGPAPSGTTEDALYYAVQAVINEGMSLQKAAQKYDLSKTVLWRRVRKHPNYMKTTRENPILTLACERLKGGDSLKNISRELDIPMSTLHRHKVRLAQQGRLPDYVSFKKRDVNSKMELKDKLNKALHACVHEGMSQNHAANLFEIPKSTLWRHLQKRVAEAELSQKLEQGDIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01357850;
- 90% Identity
- iTF_01505594;
- 80% Identity
- iTF_01505594;