Ucar006417.1
Basic Information
- Insect
- Urophora cardui
- Gene Symbol
- kn
- Assembly
- GCA_960531455.1
- Location
- OY482670.1:102969925-103005388[-]
Transcription Factor Domain
- TF Family
- COE
- Domain
- COE domain
- PFAM
- AnimalTFDB
- TF Group
- Helix-turn-helix
- Description
- This is the helix-loop-helix domain of transcription factor COE. It is responsible for dimerisation [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-52 9.1e-48 164.3 0.0 10 134 59 171 50 177 0.93
Sequence Information
- Coding Sequence
- ATGCTGCGTTCCGACGAACCAGTACCGGGCTTTAGCTCGGCCACACCATGGCCTACACTCGAACTAGAATGGGGCCGCAAGCTTTATCCGTCAACGGGTGCACGTTCGGCGAGCGGCCTCATGTTTGGCCTGCCACCGACAGCGGCGGATATGAATCAACCGCGCGGTCCCATGACCTCGTTGAAAGAGGAGCCGTTAGGTGCGCGCGCTTGGATGCAGCCGGTCATTGATCAGAGCAATTTGGGCATCGGTCGCGCTCATTTTGAAAAACAGCCGCCCAGCAATTTgcgcaaatcaaattttttccattttgtCATCGCGTTATACGATCGCGGTGGCCAACCCATCGAAATCGAACGCACAGCATTTATTGGATTTATTGAAAAGGACTCGGAATCGGATGCGACTAAAACGAATAATGGCATACAATATCGTCTACAACTGCTCTACACGAACGGTGCGCGCCAAGAGCAGGATATATTCGTGCGGCTCATCGATTCAGTGACGAAGCAGTTAagcgataaaataaatttgGTTGTCAACAATGCTGGAGCAATCATTCTGTACGCATCGCGAAAAGCTCATAAAAGCATTGGAGATACTGAGCAACTGCAAGAAATGTGCCAAGTGGAGATGCAGTGA
- Protein Sequence
- MLRSDEPVPGFSSATPWPTLELEWGRKLYPSTGARSASGLMFGLPPTAADMNQPRGPMTSLKEEPLGARAWMQPVIDQSNLGIGRAHFEKQPPSNLRKSNFFHFVIALYDRGGQPIEIERTAFIGFIEKDSESDATKTNNGIQYRLQLLYTNGARQEQDIFVRLIDSVTKQLSDKINLVVNNAGAIILYASRKAHKSIGDTEQLQEMCQVEMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01113997; iTF_01074229;
- 90% Identity
- iTF_00384363;
- 80% Identity
- -