Ucar039352.1
Basic Information
- Insect
- Uropetala carovei
- Gene Symbol
- ZEB2
- Assembly
- GCA_036926305.1
- Location
- JAXCHB010000064.1:8328917-8343241[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 85 6.5 0.2 1 23 114 136 114 136 0.97 2 11 6.4e-07 0.00036 23.4 4.2 1 23 204 227 204 227 0.98 3 11 4.6e-05 0.026 17.6 0.3 1 23 233 255 233 255 0.97 4 11 0.013 7.4 9.9 3.0 1 23 261 284 261 284 0.93 5 11 1.3e-05 0.0071 19.3 0.7 2 23 290 311 289 311 0.97 6 11 0.00035 0.2 14.8 0.9 1 23 317 340 317 340 0.97 7 11 4.4 2.5e+03 1.9 7.0 1 23 346 368 346 368 0.96 8 11 2.9e-05 0.016 18.2 1.5 3 23 376 397 375 397 0.97 9 11 2.5e-05 0.014 18.4 2.5 1 23 403 425 403 425 0.98 10 11 0.00015 0.084 16.0 0.3 1 23 431 454 431 454 0.93 11 11 3.7e-07 0.00021 24.2 0.6 1 23 461 483 461 483 0.97
Sequence Information
- Coding Sequence
- ATGGTAACTAATGGTGACTTGCTTGAAGAGAACATCCTTACACACTGCCCTCTGTTTGTGAGTATTCACGAGGATGACAAATCAACAGTGACTTACGGAGAAGATCCAGATGAAGGATGCTCAGAATCAAATAATGAGAATCCACAAGACAACATTGTGTGGCAGGGAAAGTGTGAGAATGAAGATGGTTGCAATGGTTACCAAGAGAGTTTCTTCAGGCCAATTGAAGTCGAGGAAGAGGATATCAGATGTGAAGTACTCAACCTGAGCATTAGTTCCAGAGACAACCAATATCAAGAGAGAGCCGACAATAGCACGGAAGATCTGCACGCGCAGCGTTACGAATGCGATGCATGCAGCGAGATCTTCCATAGCAAAGAAACCATCGGAAGACACGTTGCCATGCATCTCTCCGCCAAAAGTGCGAACGATTCGCCCCTTCCCTTTGGAAAGTGCGAGAATGATCGAGAGTCGAGCGAGAGTTTTCAGGAGTGCGGATGCGTTTGTTCCGTGAATCCAGCGTCTCAGAAGGCCGTCTTGCCGAGCGGAAAGTTTAACTTGTTGAGAGACTCGAAACACCAAAGGGGTTCCTATTCGAGAATAAAACCTTACAGTTGCGAACATTGCGGTAAGTCTTTCACCACCAAAAAGTACGTTAAGGTTCACATGCAGCGTACTCATGCGAACGTTAGGACGTACAACTGCGGAGTGTGCAACAAGTTGTTCGCTTACCAGAGAGACCTAGTGAATCACATGAAAGCCCATTCAGCCATCAAGCCCTTCGTATGCGACGAGTGCGGTAGGGGTTACAAGACCAAATACGCCAAGTACTACCACACTCTGTCATGCCACAGGAATCCTCAGCTGCAGTGCAAAGTGTGCAGCAAAATGTTCGGTCTGAAGAAGGACCTGAAGCGTCACATGGCCGTGCACGTTGACGAAAGGCCATTCGTCTGCGACGTCTGTGCGATCGCCTTCAAGTCGACGTATTCCTTGAAGGACCACATACTCCGCTGTCACATAAACTTCCGTCCTCACGACTGCAAGGTTTGCTGCAAGAAGTTCGCTCTCCTGAAAGATCTAACGTGCCATATGAGAGTTCACACGGTCGCCAATCCCGTCGATTGCTCCGATTGCGGCAAAACGTTCAAATCGAAGAAGATACTCAAGGAGCACATGCTGCGTTTCCACCGTGAGGTCAGGCCCCACCAGTGCCAGGTGTGCCACAAGCAATTTGCGCTCTCGAAGGACTTGAAGGCTCACATGGAAGTGCATTCGGGCTCCGAGCCCTTCCTGTGCGCGGAATGCGGGAAAAGCTACAAGACTAAGTACATATTGAAGAAGCACGTGTTGGTCGCCCATTTGAGACACTTGCTTCCTTTCCCTTGCGAGATTTGTAATAAAAGATTTTGCGACCCGTCGTCCCTCAAAGCCCACACGGCTATCCACTCCGACAAGAGGCCATTCGCCTGCATTGATTGCGGGTTGACACTCGCGTTCTTCCATTCGCTGTCTCTATTCCACTCTCACGGTTGTCCGCACTCACATTCACACGCACACAAACGAATCCCCGAAAAAATATGGGCTCGACATAAAGTTAAGGTCGCACCATTTAATTTTCCCCAATTCCCTTCTCTCCGACCCTAG
- Protein Sequence
- MVTNGDLLEENILTHCPLFVSIHEDDKSTVTYGEDPDEGCSESNNENPQDNIVWQGKCENEDGCNGYQESFFRPIEVEEEDIRCEVLNLSISSRDNQYQERADNSTEDLHAQRYECDACSEIFHSKETIGRHVAMHLSAKSANDSPLPFGKCENDRESSESFQECGCVCSVNPASQKAVLPSGKFNLLRDSKHQRGSYSRIKPYSCEHCGKSFTTKKYVKVHMQRTHANVRTYNCGVCNKLFAYQRDLVNHMKAHSAIKPFVCDECGRGYKTKYAKYYHTLSCHRNPQLQCKVCSKMFGLKKDLKRHMAVHVDERPFVCDVCAIAFKSTYSLKDHILRCHINFRPHDCKVCCKKFALLKDLTCHMRVHTVANPVDCSDCGKTFKSKKILKEHMLRFHREVRPHQCQVCHKQFALSKDLKAHMEVHSGSEPFLCAECGKSYKTKYILKKHVLVAHLRHLLPFPCEICNKRFCDPSSLKAHTAIHSDKRPFACIDCGLTLAFFHSLSLFHSHGCPHSHSHAHKRIPEKIWARHKVKVAPFNFPQFPSLRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -