Ucar036746.1
Basic Information
- Insect
- Uropetala carovei
- Gene Symbol
- -
- Assembly
- GCA_036926305.1
- Location
- JAXCHB010000061.1:5742516-5746460[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.11 63 6.9 0.1 1 23 1005 1027 1005 1027 0.94 2 11 1.9e-05 0.011 18.8 0.2 1 23 1033 1055 1033 1055 0.96 3 11 0.073 42 7.5 0.5 3 23 1063 1083 1062 1083 0.89 4 11 0.0016 0.9 12.7 0.5 3 23 1091 1111 1089 1111 0.95 5 11 3.1e-08 1.8e-05 27.5 1.9 1 23 1117 1139 1117 1139 0.99 6 11 5.1e-05 0.029 17.4 0.8 1 23 1145 1167 1145 1167 0.95 7 11 1.2e-05 0.007 19.4 0.0 1 23 1173 1195 1173 1195 0.99 8 11 6 3.4e+03 1.5 1.0 3 23 1204 1224 1203 1224 0.94 9 11 9.1e-06 0.0051 19.8 3.2 1 23 1230 1252 1230 1252 0.99 10 11 0.0001 0.057 16.5 0.1 2 23 1254 1275 1254 1275 0.97 11 11 1.3e-05 0.0072 19.3 1.5 1 23 1281 1303 1281 1303 0.98
Sequence Information
- Coding Sequence
- atGCAAAAATGCAGCATTGCCTTCAAGTCACTGGAATTATCGGCGTGCCTTCGGAAGAGATCCCGTGGAAGCGCTGAAAACGGCGCAAACGACGGTGGCAAGCCGTCGCTAAATGTGAGAAAAAAGGAAGCGGTTGACGATAATCCATGCGAAAACATCGAGAAATCAGGTTCCGCAAAAGTTAAATTTGGTGAAATGGACGTTAAAGCAAGGAGGGAACGTAAATCTGCGGGTGACGGGGTACTAACGCACCCGGTTAGGAAAAATGACGGGAAAAGCGTGAAATCGAATGTCGGAGATTTGAGGAGGGGGCCGACGAAGAGACGGGAAGAAGACGGGTGCGTCGACGCAAGTGCGGATGCAATTCAAGGAGACGATGGAATATTGAAGGCTCAGGGAGATAGCGATGGTCATGCAAAGgcagagagtgagagggggaaggaggaagctCCTCTCAGAGTGAATGAGATGGACaggaagaagagggggaaagaggaagctCCTCTATTAGTGAatgagacagagagacagaagagggggaaggaggaagctCCTCTATTAGTGAATGAgacagagaggaaaaagaggaaggaggaatcTCCTCTATTAGTGAacgagacagagagacagaagagggggaaggaggaatcTCCTCTATTAGTGAACGAGGCGgacaggaagaagaggaggaaagaggaagctCCTCTATTAGTGAacgagacagagagaaagaacagggggaaagaggaagctCCTCTATTAGTGaatgagacagagagaaagaagaggaaggaggaagctCCTCTATTAGTGAATAAGACAGAGAGAAAGCAGAGGAAAGAGGAAGCTCCTCTCGTAGTGAACGAGACACAGAGAAAGAACAGGGGGAAGGAGGAATCTCCTCTATTAGTGAACGAGGCGgacaggaagaagaggaggaaagaggaagctCCTCTATTAGTGAacgagacagagagaaagaacagggggaaagaggaagctCCTCTATTAGTGaatgagacagagagaaagaagaggaaggaggaagctCCTCTATTAGTGAATAAGACAGAGAGAAAGCAGAGGAAAGAGGAAGCTCCTCTCGTAGTGAacgagacagagagaaagaagagggggatggaggaatCTCCTCTATTAGTGAACGAGACGgacaggaagaagaggaggaaagaggaagcttCTCTCATAGTGAATGAGACAGACaggaagaagagggggaaggaggaatcTCCTCTATTAGTGAacgagacagagagacagaagaggaggaaggaggaatcTCCTCTATTAGTGAACGAGGCGgacaggaagaagaggaggaaagaggaagcttCTCTCATAGTAAATGAGACGGACaggaagaagagggggaaagaggaagctCCTCTATTAGTGAacgagacagagagaaagaacagggggaaagaggaagctCCTCTATTAGTGaatgagacagagagaaagaagaggaaggaggaagctCCTCTATTAGTGAATAAGACAGAGAGAAAGCAGAGGAAAGAGGAAGCTCCTCTCGTAGTGAACGAGACacagagaaagaagagggggaaagaggaagctCCTCTTTTAGTGaatgagacagagagaaagaagaggaaggaggaagctCCTCTATTAGTGAATAAGACAGAGAGAAAGCAGAGGAAGGAGGAAGCTCCTCTATTAGTGAATAAGACAGAGAGAAAGCAGAGGAAGGAGGAAGCTCCTCTATTAGTGAataagacagagagaaagaacaGGGGGAAAAAGGAAGCTCCTCTATTAGTGaatgagacagagagaaagaagaggaaggaggaagctACTCTCGTAGTGAATGAGACAGAGAGAAggcagaggaggaaagaggaagctCCTCTATtagtgaatgagagagagagaaagcagagGAAGGAGGAAGCTCCTCTATTAGTGAataagacagagagaaagaacagggggaaagaggaagctCCTCTATTAGTGaatgagatggagagaaagcagaggaggaaagaggaagctCCTCTATTAGTGaatgagatggagagaaagcagaggaggaaagaggaagctCCTGTATTAGTGAatgagacagagagacagaagagggggaaggaggaagctTCTGTATTAGTGAatgagacagagagacagaagagggggaaggaggtaTCTCCTCTATTAGTGAATGAGACAGAAAGAAAGCAGAGGAAGGAGGAAGCTCCTCTATTAGTGaatgagacagagagaaagaagaggaaggaggaagctCCTCTATTGGTGAACGAGACGCACaggaagaagagggggaaggaggaagctCCACTATTAGTGAACGAGACGCACaggaagaagagggggaaggagggtcCTCCTCTATTAGTGAACGAGACAGACaggaagaagagggggaaggaggaagctTCTCTCATAGTGAATGAGACGCACAGGAAGAAGAGGGGGAATGAGGAAGCTTCTCTCATAGTGAACGAGACAGCGAGAAAGAACagggggaaagaggaagctCCTCTATTAGTGAATGAGACACAGAGAAAgcagagggggaaagaggaagctCCTCTATTAGTGAATGAGACACAGAGAAAGcagaaggggaaagaggaagcTCCTCTATTAGTGaatgagacagagagaaagcAGAGGAAGGAGGAAGCTCCTCTCATAGTGAACAAAACAAAGAGAAAGAACagggggaaagaggaagctCCTCTCTTACTGAACGAGACACAGAGAAAGGTGGGACATTTTAGAAGTCAGGATCGTAGAAAGGAACTTGCAAAGAAGGACGCAGTAATGAGACATTTGAGAGGGAACAGTCATGTGGTAGAAAAGGAGGGTTGCAATGAACAAAGAGACTTACAAGTCAATACCAACATTAACGGACCTAAACATAACAAGAATGAAGTTAACTTACAGGTCAATGAAGGAAAAATGCCAGATCAAGTAAAGACCGACGCACTGAGGAGATATTTCTGCGATCTGTGCGGCAAAGGATATAAATGGATAAGCGAAATAAAAGTGCACGTAAGGGCGCACAGCGGTGAGCAGCCTTTCGCCTGCACCACCTGCGGGAAAAGGTTTAGCGCCAATTCCTCCCTAGCGAAACACGCGCTCGTCCACACCAGCGTAAAACCTCACGGGTGCGACGTGTGCGGAATGCGATTCACTCGCAAGTGGCACCGCGACGGTCACGCGCTAATTCACGCCGGGGAAAAGCCGTACGGATGTCGCGCGTGCGACAAGCGGTTTTACGAAAAATCCGGTCTCAAAAGCCACGCCCGAGTCCACTGCGGCGAAAAGCTCTATAAATGCGAAGTTTGCGGTAAGGCGTTTACCCATAATTCTAACCTCCTCCAACACCGTCGAATCCACACGGGAGTAAAACGACACGCGTGCGAAGCGTGCGGCAAGAAATTCACCAACAGTAACTCTCTCACGATCCACGGACGGATTCATACCGGTGAAAAACCGTACAAATGCGGAACGTGCGGTAAGGGGTTCGCCGCGAGCGGCGCCCTTAAAATTCACCTGCGGGTCCACGAGGGGGGAGATCGGAGCGTGGCGTGCGAAATCTGCCGCAAGCCGTTGCTCAACAGACGCGCCCTGTCGTGTCACATGCGAGTCCACATTAGCGAAAAACCGTACCAGTGCGAAACGTGCGACAAGGTATTTGCTCTGAATTGCAATCTTAAGAATCACAGGCGCAGCCACGGCGAATGCGACATATGCGGAAGGAAATTCGCCGGCGGTTCTGCTCTTAACGCTCACAGGCGAAGTCATTCTGGTGAAAAACGGTACGTTTGTTCAAAATGCGGCAGGAGATTTGTTCAAAAAAGGAAACTCGTAACTCACAGGCAAATCCATATCGGTGAAAAACCATACATACGTCGCTCAAAGTGA
- Protein Sequence
- MQKCSIAFKSLELSACLRKRSRGSAENGANDGGKPSLNVRKKEAVDDNPCENIEKSGSAKVKFGEMDVKARRERKSAGDGVLTHPVRKNDGKSVKSNVGDLRRGPTKRREEDGCVDASADAIQGDDGILKAQGDSDGHAKAESERGKEEAPLRVNEMDRKKRGKEEAPLLVNETERQKRGKEEAPLLVNETERKKRKEESPLLVNETERQKRGKEESPLLVNEADRKKRRKEEAPLLVNETERKNRGKEEAPLLVNETERKKRKEEAPLLVNKTERKQRKEEAPLVVNETQRKNRGKEESPLLVNEADRKKRRKEEAPLLVNETERKNRGKEEAPLLVNETERKKRKEEAPLLVNKTERKQRKEEAPLVVNETERKKRGMEESPLLVNETDRKKRRKEEASLIVNETDRKKRGKEESPLLVNETERQKRRKEESPLLVNEADRKKRRKEEASLIVNETDRKKRGKEEAPLLVNETERKNRGKEEAPLLVNETERKKRKEEAPLLVNKTERKQRKEEAPLVVNETQRKKRGKEEAPLLVNETERKKRKEEAPLLVNKTERKQRKEEAPLLVNKTERKQRKEEAPLLVNKTERKNRGKKEAPLLVNETERKKRKEEATLVVNETERRQRRKEEAPLLVNERERKQRKEEAPLLVNKTERKNRGKEEAPLLVNEMERKQRRKEEAPLLVNEMERKQRRKEEAPVLVNETERQKRGKEEASVLVNETERQKRGKEVSPLLVNETERKQRKEEAPLLVNETERKKRKEEAPLLVNETHRKKRGKEEAPLLVNETHRKKRGKEGPPLLVNETDRKKRGKEEASLIVNETHRKKRGNEEASLIVNETARKNRGKEEAPLLVNETQRKQRGKEEAPLLVNETQRKQKGKEEAPLLVNETERKQRKEEAPLIVNKTKRKNRGKEEAPLLLNETQRKVGHFRSQDRRKELAKKDAVMRHLRGNSHVVEKEGCNEQRDLQVNTNINGPKHNKNEVNLQVNEGKMPDQVKTDALRRYFCDLCGKGYKWISEIKVHVRAHSGEQPFACTTCGKRFSANSSLAKHALVHTSVKPHGCDVCGMRFTRKWHRDGHALIHAGEKPYGCRACDKRFYEKSGLKSHARVHCGEKLYKCEVCGKAFTHNSNLLQHRRIHTGVKRHACEACGKKFTNSNSLTIHGRIHTGEKPYKCGTCGKGFAASGALKIHLRVHEGGDRSVACEICRKPLLNRRALSCHMRVHISEKPYQCETCDKVFALNCNLKNHRRSHGECDICGRKFAGGSALNAHRRSHSGEKRYVCSKCGRRFVQKRKLVTHRQIHIGEKPYIRRSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -