Ucar018186.1
Basic Information
- Insect
- Uropetala carovei
- Gene Symbol
- -
- Assembly
- GCA_036926305.1
- Location
- JAXCHB010000029.1:6430273-6433880[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00032 0.18 14.9 4.6 1 23 501 523 501 523 0.98 2 11 1.7e-05 0.0099 18.9 6.0 1 23 529 551 529 551 0.98 3 11 9.9e-05 0.056 16.5 5.9 1 23 557 579 557 579 0.99 4 11 6.2e-06 0.0035 20.3 1.3 1 23 585 607 585 607 0.96 5 11 3.2e-06 0.0018 21.2 2.0 1 23 613 635 613 635 0.96 6 11 3e-05 0.017 18.1 0.2 1 23 641 663 641 663 0.98 7 11 0.00042 0.24 14.6 0.7 1 23 668 690 668 690 0.98 8 11 0.00037 0.21 14.7 0.8 1 23 696 719 696 719 0.94 9 11 0.00025 0.14 15.3 0.4 1 23 726 748 726 748 0.97 10 11 0.00025 0.14 15.3 3.9 3 23 824 844 822 844 0.95 11 11 1.7e-05 0.0099 18.9 2.6 1 23 850 872 850 872 0.95
Sequence Information
- Coding Sequence
- atgacttTTGTGAGCCCAGCAGAAGAGCAATGGACACCTCATTGGGCACAGAAAACTAAAGGAACTGATAGCTTTAGGACCTCAGTGAGTGGGAGTTGTGGGATGGAATTAGCTCTGGTGGAGTCTTGTTTTAAGCTACAATGTTTAGATGGAAATTCAGTTGCAATGGAAGGAAATCCTGTAAACGGGGAGATGCCATTTCCTTCTGTCTATCAGTTAAAACAAGGGAATGCAGTGGGTTTTCACGAAGAAGACTCATTAGTGATCCAAGGATTGAATGtatattgtaatcgtgaaaaatcTAAGGTGACAGAACAATCCACGCCATCTTCTATTCAACCATCATCTTACTGGAATAATAGTAGTCCCGGGAATCATGAACCAATGCctcatatttgtgaaaaaaatggaTATGAAGATGAAGCTGTACCTGTAAAAGAGAAGAATGTGATAGTAAGTTCTCCTTTAGCAACTGCACAATCTTCTACCCCCACAATTAGCGCTGACAAATTCACTTGTTCCCAACAAAGCTCATTAAAATCTACAAGCCAGAAAAGCGGGATTAACGACATGGAACTGCAATGTACAGCAATGGTTTACCCCCAATTTGGAAATACATCTGACGTGCCTCATTTTGTGAAGAAGGAAGATGTGCTTTTAGATGTCCGAGGAAACCAAAATCAAGGAATTGCCTCGTCTATGGGTTGGACTGGCCATCACTCATTAGTACACTTCGATTCATTAAAAGTGGTTCCGGAATTACTGGTGGAGAGAATACGTCAAGAGGATTCATTAATAAGAGATGTATTCCAGAACGGTGGAAGTTATCCAATTGGCTCCCATAAAAGTATCTGTACTGGTACAACATCTTCTGGGACATTCCACGCTCACTGGGGAATTTCCTCTCCCTGTGGTGTGAAATCTTACGGAGGAAATAGCAGCGCAAAGCAAAGTAGCTCGTGCTGTGATTTTTCGAATTCGTTTCAGAGTGCTGCTGCTCGACAAAATTGTAAGTCCCAAAATGAATCTTCTAAGACTTCGCAGTTAATGAATAACGAACAAAACGTCTCGTTCAAGCAGACGTCGAATTTCGGCAGAAACATGAACAGCAACTTTATGTGCAGGACAATGTTCTTAATGAACGACAACATTCAGAACAATTCTCGGGTTCATGCCAAGAACATTTTTAGCACTCCCGCCGAGAGTGGTCCGTTCATAGATCCTAAGTGTAACTTCGACACCAATTCATTCTGTTGCGGGAGTAACGGATTGGTGTTCGCCGACAAGCACGTTGCAACCAAGCACCAGCTGTCAGCTTGCGGCGTTCTCCAGCCCCCGGTACCAGTGGAGTGCGGCGGAGTGGACGCGACCAAGCGAGCGGCTCCAGGGTGCGCCCCTCAGCAGGGTGTCCCTCCAGGGGACCCCCCCGCCGAACAACGGCCGGCGGAAGACGGTCGCGGAGTCAAGGATAAGTGTGCAGCCAAACCGAAGGAGCGGCCCTTCTCGTGCGAGGAATGCGGGAAGTCGTTCCTGCTCAAGCACCATTTAACCACGCACACGCGGGTGCACACTGGGGAACGGCCTTATATATGCTCCGAATGCGGCAAGTCTTTCGCCCACAAGCATTGCCTGGTGACACACCAGCGGCTGCACACGGGCGAGCGGCCTTACACATGCCTCGAGTGTAAGAAGTCGTTCACGCTCAAACACCACCTGGTGACGCACACGCGCGTGCACTCCAGGGACCGCCCGTTCGCTTGCGGAGAGTGCGGGCGTACCTTCTCGCAGAAAAGGCACCTTGTCACGCACGCCAAGCTGCACACGGGCGAGCGTCCCTTTGCGTGCGACGAATGCGGCGAGTCCTTCTCCCAGAAGGAGCACCTCACCACGCACTCTCGCTTCCACGGAGGGGAGCGACCCTACGTCTGCCCGGACTGCGGCAACGCCTTTCAGCGCAAGTTCCAGCTCGTGAGCCACGCACGGCTGCACGGGAAGCGACCTTATTCGTGCCAGCTGTGCGGCAAGGAGTTCCTGCAGAAGAGGACGTTGGTGGCGCATACACGTCTCCATACGGGCGAGCGTCCGTTTGCCTGCCAGCATTGCGGCGAGGCCTTCGGTCGGAAGTGCGAGTTAGCCGTCCACTCCCGCGCTGCCCACACCTCGGGTGGACGCTCTTTCGCCTGCCGGGAATGCGGTAACTGCTTTGCCAGCAGAGAGGGTTTGGCACTCCATCTCCGTCTTCATGCCGGGGAGAGGTCGCTGGTCACCGACTTGTGCGGACTGGCCTTTCCGGTGGACAGGGGAAACGTAGCCGCCACTTCTAGGGTCCAGGGCATCGGGATGGTGTCCGGAGGGATGGTCGACGGCAGAGTAGGATCCACGACTGggggggtggtggtggtggggggAGAAAACAGGTGCGCGACGACCGCTCAGCCTTCGCCGTCCCTGCCGCACAAACCGCACCTGTGCCTACAATGTGGAAAGTCATTCGCCCAGAAACACGGACTTGTGCAGCACACCAAGAGGCATTCGGGAGAGAAGCCTCACGCATGCAATAAATGCGGTAAAACTTTTGCCCAAAAGTATAGCCTCTCCCTGCACTCTCGACTCCACCCCCCGACGGATGACCCTGTACCCCCTCGCCCCGTCGCCACCTCGCCGCCATCGATACAGCAGCACCCTAGTCCAACGACTACGTTGCTGCACTCTAGTCCACCAGCGATCCAGCATGCCAGCCCTCCCAATCCTCCGCAAACCCCCACGGGGGAACCTCCGGCACTCTAA
- Protein Sequence
- MTFVSPAEEQWTPHWAQKTKGTDSFRTSVSGSCGMELALVESCFKLQCLDGNSVAMEGNPVNGEMPFPSVYQLKQGNAVGFHEEDSLVIQGLNVYCNREKSKVTEQSTPSSIQPSSYWNNSSPGNHEPMPHICEKNGYEDEAVPVKEKNVIVSSPLATAQSSTPTISADKFTCSQQSSLKSTSQKSGINDMELQCTAMVYPQFGNTSDVPHFVKKEDVLLDVRGNQNQGIASSMGWTGHHSLVHFDSLKVVPELLVERIRQEDSLIRDVFQNGGSYPIGSHKSICTGTTSSGTFHAHWGISSPCGVKSYGGNSSAKQSSSCCDFSNSFQSAAARQNCKSQNESSKTSQLMNNEQNVSFKQTSNFGRNMNSNFMCRTMFLMNDNIQNNSRVHAKNIFSTPAESGPFIDPKCNFDTNSFCCGSNGLVFADKHVATKHQLSACGVLQPPVPVECGGVDATKRAAPGCAPQQGVPPGDPPAEQRPAEDGRGVKDKCAAKPKERPFSCEECGKSFLLKHHLTTHTRVHTGERPYICSECGKSFAHKHCLVTHQRLHTGERPYTCLECKKSFTLKHHLVTHTRVHSRDRPFACGECGRTFSQKRHLVTHAKLHTGERPFACDECGESFSQKEHLTTHSRFHGGERPYVCPDCGNAFQRKFQLVSHARLHGKRPYSCQLCGKEFLQKRTLVAHTRLHTGERPFACQHCGEAFGRKCELAVHSRAAHTSGGRSFACRECGNCFASREGLALHLRLHAGERSLVTDLCGLAFPVDRGNVAATSRVQGIGMVSGGMVDGRVGSTTGGVVVVGGENRCATTAQPSPSLPHKPHLCLQCGKSFAQKHGLVQHTKRHSGEKPHACNKCGKTFAQKYSLSLHSRLHPPTDDPVPPRPVATSPPSIQQHPSPTTTLLHSSPPAIQHASPPNPPQTPTGEPPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -