Ucar036862.1
Basic Information
- Insect
- Uropetala carovei
- Gene Symbol
- ken
- Assembly
- GCA_036926305.1
- Location
- JAXCHB010000061.1:8186623-8187906[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.3e-06 0.0035 20.3 0.2 2 23 82 103 81 103 0.95 2 11 0.00018 0.1 15.7 1.1 1 23 146 168 146 168 0.98 3 11 5.5e-06 0.0031 20.5 0.6 3 23 176 196 174 196 0.97 4 11 9.7e-07 0.00055 22.8 4.9 1 23 202 224 202 224 0.99 5 11 0.00015 0.085 16.0 0.2 1 23 230 252 230 252 0.98 6 11 2.3e-06 0.0013 21.7 0.4 1 23 258 280 258 280 0.99 7 11 2.1e-06 0.0012 21.8 1.7 1 23 286 308 286 308 0.97 8 11 1.2e-06 0.00069 22.5 0.8 1 23 314 336 314 336 0.98 9 11 0.0034 1.9 11.7 0.3 1 23 342 364 342 364 0.97 10 11 7.3e-07 0.00041 23.2 6.9 1 23 370 392 370 392 0.98 11 11 5.7e-06 0.0032 20.4 4.1 1 23 398 421 398 421 0.96
Sequence Information
- Coding Sequence
- ATGAATGTCATAGTTAGGAGGGTGTACACGTCTCAGGATGAGGTGATATATATGCCCCCGGTCGAGAAAAGTGACGTAAACGTGGTGGAATCGGGCGCCGGAGAGGGGATAAAGAGGCCGGAAGAATTGAACTACGTCGAGACGAGCGTGGATGAGAGAGTCAGCGAttcggagggagggagcgagaggggggCGGAGGCTCCTCTCGAGGCGaacgagggagaggaagagacggaACGCTTGAGTTGCAGAGACTgcggaaaaggttttgagaaGAAGGACGAACTAATAAGACATTTGGAATTACACGGATACGAGGTGAATGAGGGGAGCAGCACCGATGaaggaggagagtttgaagccGGTACTAACGTTCAGAAAGGATTGGAGATGAACATGCCGGATGAAGTAACGATAGAGGGAGAATTTAGGAAATATGTTTGTGAATTATGCGGTAAAGGGTTCAGTTGTATAGGTAACCTTAAAACGCATTTCAGGGTTCACACGGGAGAGAAGCCTTTTGGCTGTGCCGTTTGCGACAAAAGGTTTAGCACTAAGTACAGTCTCGTAAGTCACATTTTCACCCACACTGGCGAAAAGCCATACACCTGCCACGTATGTCGTAAGGGATTCACGAAAAACAACAGTCTTAGTAAACACATGCGTACGCATACCGGGGAAAAACGCTACGTTTGCGAAGTCTGCGGGAAGGGATTCGccgaaaaaatttattttactttccaCATGAGGATCCACAACGGAGACAGGCCTTACGTTTGCGAAGTTTGCGGGCGTACGTTTACGCAGAACAGCATTCTTGTCATGCACAGACGTACTCATACCGGCGAAAAACCGTTCAAATGCAATGTATGCGGGAAGCTATTTGCTCACAGCGGCAGCCTCACGAAACACAGGCAGGCCCATACGGGAGAAAGACCACATGTCTGCCAGGTGTGCGAAAAGGGCTTCAGGGACGTGTCTGCGCTAAGAAACCACTTAAGGACGCACTCGCAAGAAAGACCGTTCGAGTGTCAGGTGTGCAACAGGTTGTTCGGCAGTCGTACCGGCCTAGGAAGGCATTTCATGATACACACGGGAAGGAAACCGCATTCCTGCGACGTATGCAACAAATGCTTCAGAAATAGGTATTCGCTGAGAACGCATATCAGGACGCACACGAAAGAAAAGCCTTATCGGTGCAAGCTGTGCGACAAGTGCTTTGGCGATAATTCCACTCTGAGGAAGCATTTTTTAAGGATACATTCGCACGAAATACCATGTTGA
- Protein Sequence
- MNVIVRRVYTSQDEVIYMPPVEKSDVNVVESGAGEGIKRPEELNYVETSVDERVSDSEGGSERGAEAPLEANEGEEETERLSCRDCGKGFEKKDELIRHLELHGYEVNEGSSTDEGGEFEAGTNVQKGLEMNMPDEVTIEGEFRKYVCELCGKGFSCIGNLKTHFRVHTGEKPFGCAVCDKRFSTKYSLVSHIFTHTGEKPYTCHVCRKGFTKNNSLSKHMRTHTGEKRYVCEVCGKGFAEKIYFTFHMRIHNGDRPYVCEVCGRTFTQNSILVMHRRTHTGEKPFKCNVCGKLFAHSGSLTKHRQAHTGERPHVCQVCEKGFRDVSALRNHLRTHSQERPFECQVCNRLFGSRTGLGRHFMIHTGRKPHSCDVCNKCFRNRYSLRTHIRTHTKEKPYRCKLCDKCFGDNSTLRKHFLRIHSHEIPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -