Basic Information

Insect: Uropetala carovei
Gene Symbol: -
Assembly: GCA_036926305.1
Location: JAXCHB010000061.1:4253710-4255479[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0034 1.9 11.7 3.8 1 23 83 105 83 105 0.94

2 13 0.00014 0.079 16.1 1.3 1 23 186 208 186 208 0.98

3 13 1.4e-05 0.0079 19.2 3.8 1 23 253 275 253 275 0.97

4 13 2.2e-05 0.013 18.6 6.6 1 23 309 331 309 331 0.99

5 13 2e-05 0.011 18.7 5.2 1 23 337 359 337 359 0.98

6 13 2.3e-07 0.00013 24.8 0.2 1 23 365 387 365 387 0.99

7 13 3.6e-07 0.00021 24.2 1.2 1 23 393 415 393 415 0.99

8 13 7.3e-06 0.0041 20.1 0.1 1 23 421 443 421 443 0.98

9 13 3.6e-07 0.0002 24.2 2.1 1 23 449 471 449 471 0.99

10 13 2.5e-06 0.0014 21.6 0.7 1 23 477 499 477 499 0.99

11 13 1.1e-07 6.1e-05 25.8 3.3 1 23 505 527 505 527 0.99

12 13 0.0031 1.8 11.8 1.4 1 23 533 555 533 555 0.99

13 13 6.6e-06 0.0038 20.2 3.8 1 23 561 583 561 583 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0034	1.9	11.7	3.8	1	23	83	105	83	105	0.94
2	13	0.00014	0.079	16.1	1.3	1	23	186	208	186	208	0.98
3	13	1.4e-05	0.0079	19.2	3.8	1	23	253	275	253	275	0.97
4	13	2.2e-05	0.013	18.6	6.6	1	23	309	331	309	331	0.99
5	13	2e-05	0.011	18.7	5.2	1	23	337	359	337	359	0.98
6	13	2.3e-07	0.00013	24.8	0.2	1	23	365	387	365	387	0.99
7	13	3.6e-07	0.00021	24.2	1.2	1	23	393	415	393	415	0.99
8	13	7.3e-06	0.0041	20.1	0.1	1	23	421	443	421	443	0.98
9	13	3.6e-07	0.0002	24.2	2.1	1	23	449	471	449	471	0.99
10	13	2.5e-06	0.0014	21.6	0.7	1	23	477	499	477	499	0.99
11	13	1.1e-07	6.1e-05	25.8	3.3	1	23	505	527	505	527	0.99
12	13	0.0031	1.8	11.8	1.4	1	23	533	555	533	555	0.99
13	13	6.6e-06	0.0038	20.2	3.8	1	23	561	583	561	583	0.99

Sequence Information

Coding Sequence: ATGTATGTTGTACAGGATGAGAAAACTGACGTCAGTCAAGTGGAATCGGGCGTTGGAAAGTTGAGGAGGGTTAGGATAAAGAGGCAGGAGGAAGTGAACTTTGTAGACGCAAGGGCAGATGCCGTCCTAGGAGATGAGGGAATTTTCAAGTTTACGCTAGAGAACGGGAGTAAGACGGAGGGAGGTGGTGAGAGGGGAGAGGACCCTCCTCTTGGATTGAAGGACAGAGAGGGCAAGAcggaatattttcattgttatcaCTGCAGGAAGTATTTTGTGGAAAAGGACGAATTAATAAGACATTTGGGATTGCACAGTTGTGAGGTAAATGCGAAGGGTTGCGACGAAGACACAGTTGGAAAGTTGAGGAGGGTGAGGATAAGGAGGCGGAAGGAAGCGAAGTTAGTACATGCAAGGGCGGATGCCGTCCTAGGAGACGAAGAAACGTCCGCGTTAAAGCCGGAGAGCGGGAGCaaggcagagggagggagtgagacgGAAAGGGGAGAGGACGCACCTCTCGgaacgaaggagagagaggaaaagacgGAATATTTCCGTTGTTATCACTGCAGGAAGGATTTTGGAGAAAAGGACGAATTAATAAGACATTTGGCGGTGCACAGTTACGGGGCAAACGGGAAACGCGACGGAGAGACGGACTTCAAcgtcaaaattaatattaactGCAAAATTCGTGGGATAGAATCGAGGAATGCGTCGGAGGAAGTGAAGCTGGAGGACGGAGGTCGGAGTTACATCTGCGACTTATGCGGGAAATGTTTCTATTTGATTTCTCACctgaaaaaacatttaagaGCGCACAGTTTAGAGAGACCTTTTACTTTCGATATCACCTACAGGAAGTTTATGGTTAATTCCATCATGAAAAGACACAATCTCATCCACGTTAATGAAAAACCTTACAGATGTGAAGCGTGCGATATGCGTTTTTCGCATAACTGTCATCTCGAAAGGCACATGAGAGTACATACCGGCGAAAAGCCATTTAAATGCGACGTGTGTGATATGACGTTTTCTCACGCCTGTTATCTCAGAAGACACAGGCAAGTACATGCTGGTGAAAAGCcatataaatgtgaggtatgcGATATGGTATTTTCTCAAAATGgcgatcttgtgaaacacacaCGAGTTCATACTGGTGAAAAACCGTATAAATGCGAAGTGTGCGATATGTGTTTTGCTCAGAGTAGTTCACTTGCAAATCACACCCGAGTTCATACCGGCGAAAAACCATACGTCTGCGAAATATGCGGGAGGGCGTTTACTCTGTATAGCAGTCTATTGAGTCACGGTCGAGTTCATAGTGGTGAAAAACCATACAAATGCGAAGTGTGCGACGTGCGGTACGCCCACAAGAGTAACCTCGCAAGACACCGACGAACGCACAGCGGCGAAAAACCTTATAAGTGCGAATTGTGCGGTACGCGGTTTTCGCAAAACACTAGCCTTGTCGTACACGGGCGAAAACACAGCGGCGAAAAACCGTTTAAATGCGAGGTGTGCGGTAGGAAATACGCCCATAAGAGTAACCTCGTACGACACAGGAGAACGCATAGCGGGGAAAAACCTTATAAGTGCGTGTCGTGCGGTATGCAATTTTCTCAACGTACGATTCTTGTGACGCACAGGAGAAAACATACCGGTGAAAAACCGTATCGATGTGACGTGTGCGATATGCAATTTTCTCAGAATTGTAATCTCGTGAAACACAGGAGAAGACATAGTAGTGGTGAAAAACCATAA
Protein Sequence: MYVVQDEKTDVSQVESGVGKLRRVRIKRQEEVNFVDARADAVLGDEGIFKFTLENGSKTEGGGERGEDPPLGLKDREGKTEYFHCYHCRKYFVEKDELIRHLGLHSCEVNAKGCDEDTVGKLRRVRIRRRKEAKLVHARADAVLGDEETSALKPESGSKAEGGSETERGEDAPLGTKEREEKTEYFRCYHCRKDFGEKDELIRHLAVHSYGANGKRDGETDFNVKININCKIRGIESRNASEEVKLEDGGRSYICDLCGKCFYLISHLKKHLRAHSLERPFTFDITYRKFMVNSIMKRHNLIHVNEKPYRCEACDMRFSHNCHLERHMRVHTGEKPFKCDVCDMTFSHACYLRRHRQVHAGEKPYKCEVCDMVFSQNGDLVKHTRVHTGEKPYKCEVCDMCFAQSSSLANHTRVHTGEKPYVCEICGRAFTLYSSLLSHGRVHSGEKPYKCEVCDVRYAHKSNLARHRRTHSGEKPYKCELCGTRFSQNTSLVVHGRKHSGEKPFKCEVCGRKYAHKSNLVRHRRTHSGEKPYKCVSCGMQFSQRTILVTHRRKHTGEKPYRCDVCDMQFSQNCNLVKHRRRHSSGEKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -