Basic Information

Insect: Uropetala carovei
Gene Symbol: -
Assembly: GCA_036926305.1
Location: JAXCHB010000040.1:1310970-1312685[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.9e-05 0.028 17.5 0.2 2 23 30 52 29 52 0.96

2 15 0.22 1.2e+02 6.0 2.5 2 23 57 79 56 79 0.90

3 15 0.0012 0.67 13.1 4.1 1 23 83 105 83 105 0.98

4 15 1.4e-06 0.00078 22.4 0.6 1 23 111 133 111 133 0.98

5 15 2.9e-07 0.00016 24.5 2.2 1 23 139 161 139 161 0.96

6 15 0.0055 3.1 11.0 5.4 1 23 171 193 171 193 0.98

7 15 6.6e-06 0.0037 20.2 2.7 1 23 199 221 199 221 0.95

8 15 4e-06 0.0022 20.9 1.0 1 23 227 249 227 249 0.99

9 15 2.3e-05 0.013 18.5 0.4 1 23 255 277 255 277 0.98

10 15 5.3e-07 0.0003 23.7 1.0 1 23 301 323 301 323 0.99

11 15 5.7e-08 3.2e-05 26.7 1.4 1 23 329 351 329 351 0.99

12 15 0.00042 0.24 14.6 0.0 1 23 357 379 357 379 0.96

13 15 0.0001 0.058 16.5 3.3 1 23 385 407 385 407 0.98

14 15 7.2e-09 4.1e-06 29.6 0.5 1 23 413 435 413 435 0.99

15 15 1.2e-05 0.0065 19.5 1.3 1 23 441 463 441 463 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.9e-05	0.028	17.5	0.2	2	23	30	52	29	52	0.96
2	15	0.22	1.2e+02	6.0	2.5	2	23	57	79	56	79	0.90
3	15	0.0012	0.67	13.1	4.1	1	23	83	105	83	105	0.98
4	15	1.4e-06	0.00078	22.4	0.6	1	23	111	133	111	133	0.98
5	15	2.9e-07	0.00016	24.5	2.2	1	23	139	161	139	161	0.96
6	15	0.0055	3.1	11.0	5.4	1	23	171	193	171	193	0.98
7	15	6.6e-06	0.0037	20.2	2.7	1	23	199	221	199	221	0.95
8	15	4e-06	0.0022	20.9	1.0	1	23	227	249	227	249	0.99
9	15	2.3e-05	0.013	18.5	0.4	1	23	255	277	255	277	0.98
10	15	5.3e-07	0.0003	23.7	1.0	1	23	301	323	301	323	0.99
11	15	5.7e-08	3.2e-05	26.7	1.4	1	23	329	351	329	351	0.99
12	15	0.00042	0.24	14.6	0.0	1	23	357	379	357	379	0.96
13	15	0.0001	0.058	16.5	3.3	1	23	385	407	385	407	0.98
14	15	7.2e-09	4.1e-06	29.6	0.5	1	23	413	435	413	435	0.99
15	15	1.2e-05	0.0065	19.5	1.3	1	23	441	463	441	463	0.99

Sequence Information

Coding Sequence: ATGGaccctaatttaaaaaataaaatcgtggGAACCATACAGAAGCTGGTGCGCCGCAACAGATTTTCTCATGCAGGACGTAACGTTTCTTGTCCGATTTGCAAAATTAAATTCACATCGACCGCGGCTCTGGAAACGCATCGCAGGATCAAACACGATGAGCGTCTCCCTTGCCGCTTTTGCTCTCGTTTGTGTCGCTCGGAATCCGCCTTGAAGAAACACGAAAGTTATTACCACGTCAAGGAGTTCAAGTGTCACATATGCGACGAGCAGTGCAAGTCACGGGGCGTTCTGCGCAAGCACGAACTTAGCCACTTCGGAGAAAGACCATTCAAGTGCAGCACTTGCGGAAAGGCTTACACATCTCGCGGGAGTCTCCAGATCCACGTCACCACGCATTCCAATGAGAAGCCCTATCTTTGCGACAAGTGTGGCAAAGGATTCAAGCATGTGAGCAACTTGAATGCCCACAGGAGGACACACTCGGACGACCCCTCAGTGGTCAAGGCTCACCGCTGCAACATTTGCTCCAAGGCGTTTCGGTGCCAGTTTCTTGTGCGAGAACACATGCGCATGCACACTGGCGACAAACCCTTCGTTTGTGAGCACTGCGGCAAATCATTTTACAAAAAACAGCAACTGCGACAGCATTCTGCCGTGCATGCCACCGCACCGCTGTTCAAGTGCGCAGTGTGCGGTGCTCGATTCAACCGCAAGGGCAACATGATGCAGCACCAAAAGCGACACGGCAAAGAAGGAGTCTTCACGTGTCGGATATGCGGAGAGACATTCTCCAGCATTGGCCTCGTCCTCCGCCACCGGCGCTCGCACGGGGAGGAGGGTATCCCTGGAACCGGCTCCGGCGAAGGGGAGGAGCAGGACCCGGAGTTGGCGATGGCGTTCAAATGTGATTGGTGCGGAAAGTTCCTATCGTCGAAGGTCTCACTCACGCTGCACATGCGTACACACACTGGCGAGCGCCCGTACTCATGTACGCTGTGCGGTAAAAGCTTCTCGCAGAGCACATCCCTCAAGGTGCACGAGCGCACACACACAGGAGAGAGGCCTTTTGCGTGTGGACAGTGTGCACGTGCCTTCTCATCACGTGCTGCTCTCACAGTGCACGAGCGAGGGCATACGGGTGAGCGACCCTACCCATGCAAGGAGTGCGGCAAGTCGTTTCGTTGCGCTGCTGCCCTCAAGCAGCACCACACGACGCACTCGGATGACCGCCCATACCCGTGCGAGTACTGCGGCAAGAGGTTCAGGAGGAAAGAAGCCCTCGAGATCCACCTTCGGACCCACACTGGGGAGAGACCTTACAGCTGTAAGATATGTTCGAGGAGATTTGCTCAGAAGGGAGATGCAAAGAAGCACGAACGAACCCACGAAAAGGTGAGGAGACAAAACGCTGCACCACGGATTGAACTCTTGGACGAATGCTCCGATAGCTATGAACGTCAGCCATTGTCTCTTGTCGAAATTACTACTGATCCAGAGTCGGCTGCTGAGCAGTCTGTTTCTTCGATGAATGCATCTCTGCAGCTCGAGCATAGTGTTGTCGAAGACCCCTATCCAAATCTCCCTCCTGGGACAATCATCATTAATACCCAGGATCTGATGACGAGCTCGTCAGAAATTACAGTTGTAGCTGAAGAGGATCTCAATAATCATATTTTAGGGAATGGTATCTCTATACATTATGAAGAATGCTAG
Protein Sequence: MDPNLKNKIVGTIQKLVRRNRFSHAGRNVSCPICKIKFTSTAALETHRRIKHDERLPCRFCSRLCRSESALKKHESYYHVKEFKCHICDEQCKSRGVLRKHELSHFGERPFKCSTCGKAYTSRGSLQIHVTTHSNEKPYLCDKCGKGFKHVSNLNAHRRTHSDDPSVVKAHRCNICSKAFRCQFLVREHMRMHTGDKPFVCEHCGKSFYKKQQLRQHSAVHATAPLFKCAVCGARFNRKGNMMQHQKRHGKEGVFTCRICGETFSSIGLVLRHRRSHGEEGIPGTGSGEGEEQDPELAMAFKCDWCGKFLSSKVSLTLHMRTHTGERPYSCTLCGKSFSQSTSLKVHERTHTGERPFACGQCARAFSSRAALTVHERGHTGERPYPCKECGKSFRCAAALKQHHTTHSDDRPYPCEYCGKRFRRKEALEIHLRTHTGERPYSCKICSRRFAQKGDAKKHERTHEKVRRQNAAPRIELLDECSDSYERQPLSLVEITTDPESAAEQSVSSMNASLQLEHSVVEDPYPNLPPGTIIINTQDLMTSSSEITVVAEEDLNNHILGNGISIHYEEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00797272;
90% Identity: iTF_01402241;
80% Identity: -