Ucar036643.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Uropetala carovei
Gene Symbol
-
Assembly
GCA_036926305.1
Location
JAXCHB010000061.1:4032787-4034712[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.5e-05 0.0087 19.1 3.2 1 23 97 119 97 119 0.97
2 17 0.0017 0.94 12.7 0.3 1 23 169 191 169 191 0.97
3 17 0.00018 0.1 15.7 0.2 1 23 215 237 215 237 0.97
4 17 1.2e-07 6.7e-05 25.7 2.0 1 23 243 265 243 265 0.99
5 17 0.012 6.7 10.0 0.4 3 23 273 293 271 293 0.97
6 17 1.7e-06 0.00097 22.1 0.5 1 23 299 321 299 321 0.99
7 17 1.3e-07 7.1e-05 25.6 0.8 1 23 327 349 327 349 0.99
8 17 2.9e-05 0.016 18.2 0.1 1 23 355 377 355 377 0.98
9 17 3e-06 0.0017 21.3 0.6 1 23 383 405 383 405 0.99
10 17 1.7e-08 9.6e-06 28.4 0.7 1 23 411 433 411 433 0.98
11 17 3.3e-07 0.00019 24.3 2.8 1 23 439 461 439 461 0.99
12 17 9.3e-07 0.00053 22.9 0.3 1 23 467 489 467 489 0.99
13 17 3.4e-06 0.0019 21.1 1.2 1 23 495 517 495 517 0.99
14 17 1.6e-06 0.00093 22.1 0.1 3 23 525 545 523 545 0.98
15 17 2.1e-05 0.012 18.6 0.3 1 23 551 573 551 573 0.98
16 17 1.2e-06 0.00069 22.5 4.8 1 23 579 601 579 601 0.99
17 17 6.2e-07 0.00035 23.5 0.4 1 23 607 629 607 629 0.98

Sequence Information

Coding Sequence
ATGGATATGAAAGTGACAAGGGTTTGGAGTTGCCCAGGTAAGAGGATGTACGTCCTCCATGACGAGAAAACTGACGTCGATAGAGTGGATTCGAGTGTCGGGAAGTTGAGGAGAGTTAGGATAAAGAGACAGGAGGAAGTGAACTTTGTCAACACAAGTGCAGATTCCATGATAGGTGAAGAAGGAATAAGTAAGTCGAAGTTAAACACtgagagtaaagaaaaaggagaatggCGGAGGATAGAGGACGCTCCTCTTgaagtgaagagagagggaaagccGGAGTATTTCAAGTGCCACCACTGCAGAAAGGTTTTTGGAAAAAAGGACGCATTAATAAGACATTTGGGAGTCCACTGCTATGGGGTAAATGGGCAGAGTCGCAGTCCAAAAAGGGACTCCCGAGTTAACATGAACAGTAACCGTAAAACGAGCGAGGTCCGTAAGAAAGGTTTGAAGGTGAATATGCCGGATACAGTAAAGAAGGAGGATGAAGTTAGCAGATACGTCTGTGATTTATGCGGTCAAGGATTCAGTTGTATAAGTGAGCTGAAAGTACATTTAACGGTACACCTCGGAGGTGGTACTCGTAGCGAACATTTTAACGGTAAAACCGCCCTGATAAATCACGGCGTAAAACCGTATGAATGTCAAGTATGTGGGAAGGAATTATCCAGCATGCGCACTCTTAAAAGACACGGTCTAGTCCATACCGGTGAAAAACCATTTAAATGTGGAGTATGCAGTAAGGTATTTTCTCGAAAGGCTCACCTTAAAGAACACCTAAGAGTCCATACCGGTCACAAACCGTACGGATGCGACGTGTGCGGTAAGGCGTTCGCTCTCAAGTGCATTCTCGTCACGCACCGTCGAGTTCATACCGGTGAAAAACCGTTTAAATGCGAGGTGTGCCGTAGGGTGTTCGCCCTGAAAGGTAATCTCATAAGACACCGACGAGTTCATACCGGTGAAAAACCGTATAAATGCGAACGGTGCGGGAAGAGGTTCACGCAGCGCGGCGATCTCGTCAGTCACTTGCGGATTCATACCGGCGAAAAACCGTACAGCTGCGATGCGTGCGAGAAGAGGTTCGCTCAGAACGGCGCTTTGATCGTTCATCGACGGGTGCATACCGGCGAAAAGCCGTACGAATGCGAGGTGTGCCGGAAGGTGTTCGCGCTGAACTCCACCCTCAAAACGCACCGTCGGGTTCATACCGGCGAAAGACCCTTCGTTTGCGAAGTGTGCGGGAAGGTTTTTACTCAAAGGGCTCATCTTAACGAGCATCAAAGGGTGCATACTGGTGACAAACCGTACGAATGTCACCTGTGCGGTACGGAATTTTCCCAAAAGGCTCATCTCAAAGAACATCTAAGGGTCCATACTGGTGACAAACCTTATAAGTGCCgagtgtgcgacaagaggttcGCTCAGAACGGCGACCTCGTCAGCCACGTGCGCGTGCACACCGGCGAAAAGCCGTTCAAGTGCGAAATGTGCGAGAAGAGGTTCACTCAAAACGGCGCTCTGTTTCTCCATAAACGAGTTCATACCGGTGAAAAACCCTACGGATGCGAGGTGTGCGGAAAGGTCTTCGCCCTGAACTCCAGTCTCAAAACGCACCTCCGAGTTCACACCGGCGAAAAACCGTATCGATGCGCGGTTTGCGAGAAGAGGTTCACTCAGCACGGCGCTCTGATCATTCACGGACGGATACATACCGGTGAAAAGCCGTACCGATGTCACTTATGCCGTAAGGTGTTTTCTCAAAAGGGTCATCTCAAAGAACACGTGAGGGTTCATAATGGGGACAGACCTTACGAATGTGCGGTATGTCGTAAGGTATTTACCAGAAACAGGAATCTTATCATTCACACGCGAGTACACACCGGCGGAATACCTTTAAGCGAACTGCTCAAAATGTAA
Protein Sequence
MDMKVTRVWSCPGKRMYVLHDEKTDVDRVDSSVGKLRRVRIKRQEEVNFVNTSADSMIGEEGISKSKLNTESKEKGEWRRIEDAPLEVKREGKPEYFKCHHCRKVFGKKDALIRHLGVHCYGVNGQSRSPKRDSRVNMNSNRKTSEVRKKGLKVNMPDTVKKEDEVSRYVCDLCGQGFSCISELKVHLTVHLGGGTRSEHFNGKTALINHGVKPYECQVCGKELSSMRTLKRHGLVHTGEKPFKCGVCSKVFSRKAHLKEHLRVHTGHKPYGCDVCGKAFALKCILVTHRRVHTGEKPFKCEVCRRVFALKGNLIRHRRVHTGEKPYKCERCGKRFTQRGDLVSHLRIHTGEKPYSCDACEKRFAQNGALIVHRRVHTGEKPYECEVCRKVFALNSTLKTHRRVHTGERPFVCEVCGKVFTQRAHLNEHQRVHTGDKPYECHLCGTEFSQKAHLKEHLRVHTGDKPYKCRVCDKRFAQNGDLVSHVRVHTGEKPFKCEMCEKRFTQNGALFLHKRVHTGEKPYGCEVCGKVFALNSSLKTHLRVHTGEKPYRCAVCEKRFTQHGALIIHGRIHTGEKPYRCHLCRKVFSQKGHLKEHVRVHNGDRPYECAVCRKVFTRNRNLIIHTRVHTGGIPLSELLKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-