Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.00012 0.3 13.5 0.0 17 37 1 21 1 26 0.89

2 3 0.00071 1.7 11.1 0.0 7 40 67 100 66 105 0.73

3 3 1.3 3.1e+03 0.6 0.2 14 23 183 192 179 194 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.00012	0.3	13.5	0.0	17	37	1	21	1	26	0.89
2	3	0.00071	1.7	11.1	0.0	7	40	67	100	66	105	0.73
3	3	1.3	3.1e+03	0.6	0.2	14	23	183	192	179	194	0.77

Coding Sequence: ATGACACTGTGGGAAGcatccaaaatatataaaattcccTACAGAACCCTGAAGAGATGCATCTACTCTCAAAATTTAGCAAAGGGTTCACCTGATCCAGGAGGGTGTCAAGGGAAAGACAACGGAAGGGCCTTCGTGGAATACGTAAAGCGCCTTCAAGAGGCTGGTTTTCCCCTAACTGCGAAAGCTCTACGGCAAGAGGCTGTACATCGTTTAGAAACAGGAGATATAGGTCTGCGAGAGGCATTAAGGCATGGGATCCCTACTCGAACCTTAAAGAGAAGATGGAAATCTGGTGACTTGTCCCAAAAACAACTTGGACCGCCagGTCTGTTTGTGCCagaaacagaaagaaaaatagTTGCCCACATCAAAGAACTGGGAAAGGCAGGATTCGCTCCCGATAGGAGAACTGTCCGTTCCATTGCCTATCGATTTGCTGTTGAGCTTAATCTTCAACACAAATTCAACAATGAAGAAGAATTAGCTGGATACGACTGGCTGCGCTCTTTCATGGAAAGGAACCCGGACTTACGAGTGCGACAGTCAGAAGGGCTATCCATGGCGCGAGCTCAGGGAATGAATCGCAAAGATGTTGGTAATTATTTCACAATGTTGGAAAACATTATGACTGAACACAATCTATTCAATAAGCCTCAGAATATAAGCAATATGGACGAGACAGGTTTTTTGTGA
Protein Sequence: MTLWEASKIYKIPYRTLKRCIYSQNLAKGSPDPGGCQGKDNGRAFVEYVKRLQEAGFPLTAKALRQEAVHRLETGDIGLREALRHGIPTRTLKRRWKSGDLSQKQLGPPGLFVPETERKIVAHIKELGKAGFAPDRRTVRSIAYRFAVELNLQHKFNNEEELAGYDWLRSFMERNPDLRVRQSEGLSMARAQGMNRKDVGNYFTMLENIMTEHNLFNKPQNISNMDETGFL

Sequence clustering based on sequence similarity using MMseqs2