Basic Information

Gene Symbol
ct
Assembly
GCA_036926305.1
Location
JAXCHB010000028.1:4927455-4945157[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5e-32 2e-27 97.6 0.0 3 77 768 843 766 845 0.96
2 2 2.9e-31 1.2e-26 95.2 0.1 3 75 1096 1169 1094 1172 0.96

Sequence Information

Coding Sequence
ATGGCGACTCACGGGACCAgcagaggagggaggaggcgtGATAGAGGTGGAGAGGGGCCGAGGAATCTCTCATTACCCGTGACATTATCCTCCTACGGTCCGCCCCATCGAGAGCTCTCCGCCGCCCCTCCCCGTCTACCTCCACTCTCCCTATCCTTTCCACGCTCCTCGTCCTCACCTCGCCCTTTCTTTGTCCTGCCGCTCCATGTGtgcggaggaggaaagagggtgcGGGAAGACCAAGGGGATAGGGGGGGATCGAGAGGGCCGCCGGTGTCGCTGAAGGTGAGGGCGGGTCACttcggaggaggggagggaaggccCTTCGGAGGAATGGTCGGCTGCGATGGCAGAGATCGCCGGTATCAGGGACCCATTGTCTTCTTTCCCTCCGGGTCCCCACACTCGCCTCTAGTGGCTCTCATCTTCCACCACCCCTCCAGACGCGACGTTCTCccacctttttttatttcctcccccttccacatacctccctccctccctctccactcccatCTCGCACAACCTTCCGCTTCGCATTCTCTGCTCCGGATACGACGTTATGAATACCCCGGCCTGAACTCCCGAGGCACGGAGGGGACAACCTTATGTGGCGGGTCTCTGGCGAAACGAAAGGACTCGTCATCCGACCCTCTCCATTGCCCCGTTCCATTACCAAGctcctcttttccaccagcTTCCTTTTTGCTCCCAACCTCCCTCGGCGTCACCCGTTCGACCCCTCGTTTTCTCGTGTCctgcctctttctccccttcccccaaTACTCCCTCACCCTCTTCAGTTACTCCCGACCGTTTGCCTTCGACCCCGATAACTTGGCCGTTTCCTCCATTCCTTGCCCTTGTTCATTACGCGAGCACTCTCTTCCCTTGTCCTTGATATCCTTCCTTCCACTTCGTTTCTGCAAGGATACCGGGGGTATACCCGGTTTTGGAGCCGCAAGAGGCATCGGCGAGGACAGTATGACGGAGGAACGCATCGTACACATTCTGAACGAAGCGAGCCACGCGATGAAGACGGCGTCTGCCTCGCTGCACGGAGTAGTGTTGGGCGGAGTAGGTAGCGGCGGCGGAGGACAAGAAGACAGCCGCAGCAACGATGACAGCAAGTCGCCGCACCACGGACAGAGTTCTTCGCCTCTGTTGGGCGGTAACGGGTCCGGTAAGGACGGATCTAGTTCGCAGAACCGCCGCCTCAAGAAGTACGAGAATGATGACATACCGCAAGAGAAGGTGGTCCGTATATACCAAGAGGAATTGGCGAAATTGATGGGTCGTAGGTTAGAAGACTCCATGCGCAATCCAAGAGATCATCACTTCCCGAGTCTGCTTTTCCCTCACTTTTTCAGTGGCGCGGGCGCACCGGGGGGCAACGGCGGAGGAAGCACCGGGCATCCGCTCATGGACCGAACCCAAGAAGAGATCCGCATGGCCCTCGACGCATACCATCGGGAGCTCGTCAAGCTCAACGTGgcccctccgcctccctcctccccatcttCGGTGGGGCCCGGCGCGAACATGCCCCACCCGCCCCCTCCCTCATCGGCCCCGTCCCCTGCCTCGTCGTCGGCCGCCATGTCGACCACCACCAACTCGATCGTATCCCAGGCGgggctcctcgctctgcatcaaCATCACCAGCAGAACATGCAGGGCCACAACGGCATGGCGCAGGACCTGTCGCTGCCGAAGATGCCCAACGGAGGCCTCGAAGGCATGGGGATGGTCAAGAAGGAGGTGCTTGGTCCGGTGGATCAGCACCAGTTgcagcagcagcaacaacaacagcagatgcagcaacaacaacagcagatgcagcaacaacaacaacaaatgcaGCAACAACAACAAATGCAGCAGCAGGCGGCGAATGAAGCAATTAGGCATGCAGGAAGTGCCTTCTCACTCGTCAGGCCCAAAACCGAACCAGGTTTACCCGGAGCCGGATCTCAAGGAAGTGGCGGCGGGAGTGGTGGAGCCAGCGGCGGGCAGGGAGGGTGCGGAAGCACCCCGGGAGCGAGTCCCCTCGGAGGGGGCGTGCCTCCTTCCCCCGCGCCACCACCCACTCCGTCCTCGCTGCTGGTGGGCGTGGGCGCGGAGGACTTCGGCCCATCCTCGTTGGCTTCCACGGGCGCCAGTCCTCTCCAGAGGATGGCCTCGATCACCAACGCCCTAATCTCGGCCCCCGTCGTGCCGAGCCACGTTCACGGCACTCCGTCCCAGAGACCTCTTAAGGCAGTGCTCCCGCCGATCACACAGCAACAGTTCGACCAGTTTAACAACCTTAACACGGAGGACATCGTGAAAAAGGTCAAGGAACAGCTCAGTCAATACTCCATCAGCCAAAGGCTGTTTGGAGAATCTGTGTTGGGACTGTCGCAAGGCTCCGTGTCCGATCTCTTGGCTCGACCAAAGCCGTGGCACATGCTCACGCAAAAGGGTCGCGAGCCGTTCATTAGAATGAAGATGTTCCTGGAAGACGATAACGCCGTGCACAAGTTGGTGGCAAGCCAATATAAGATCGCCCCGGAGAAGTTGATGAGGACAGGAGGATACGGCGGAAGTCCCCGCCCGACAAAGCCTTTGTCTAAGCTGTCAGCTGTGATGCCGCCATCCGGGATGGACCCTGTATCCAAGGCGATGGACGCCGTCGTTTCATCGTCGCCGTCGTCGTCCGCAGTGCTCTCGGCCGTCGTGGCGGCGGGACAGATGGCAGCAGCTGCTGCAGCGGCTGCCGCGATGCACCACGGCGGAGGAGCGTCGTCGACGCCCTCGCACCCAGACACCACGACCTCACCGTCTGCGCTCCTCAAGCGAGGAGGACACCACCACCATCCTCATATGCCACCGCACCACCAGCATCATCATCCCTCTCAGGGACCTCCCCAACATTCACCCCTCCATCATCCGCATCTCGGACCCCACCCTGGTGCAATGCCTCCTGGAGTCCCAACGTCCGCCGCGGGGATGCTCGTCTCGCCTCCGCCAGGTATGGGCATGAGATCGGTCTTGCATCACGTCCCCCACCCCATTCCGCCCCCAGTCCCTCAGCAACAGATGCAGCAGTCCTTGCACCCGCCATCCTCGGCGTCGTCTAGCCCCTCTTCGTCTGGCGCCCCGCCCCCGGCCGGCGCCCTCGTCTCCCCGCCAGCGCCGCCCTCCTCCGCCGCCTCCACCCCATCGTCCGCGCACCATCCACACCCTCACCATCCTCACCACCACCACGTGCAACCGAGTGTGTACGAGATGGCGGCGCTCACTCAAGACTTGGACACCCAACAAATCACCACGAAGATCAAGGAGGCTCTGCTAGCCAACAACATTGGCCAGAAGATATTCGGCGAAGCAGTTCTAGGACTGTCGCAAGGATCGGTCAGCGAACTCCTATCCAAACCAAAGCCGTGGCATATGCTTAGCATCAAGGGTCGTGAGCCATTCATCCGCATGCAATTGTGGCTCAACGACACGCACAACGTCGAAAAGCTGCAACATTTGAAGAACGAGAGGCGAGAGGCGAacaagaggaggagaggaagtcACCACGGAAGCGGAGGCTCCGGAGGCCCTAGCGGTTCGATGGGAGGTTCCAGCTGCGGAGTGACTGACAACGGGAGTGACACGTCTTCCAACGACACGGCGGACTTCTACCACGCGGGCCCCGGGAGTCCGGTCGGGAACGGCTCAGGCGTCTCCGGTTCAACCAGTGGCGGACCCGGAATGCCAGGAGGATCGGTCGGAGTTGCGACACCCCCGGGTCCCTTGGGACACCACCACAACTTCTTGCACCACCAGCAGTCGCAGGCGCAAATGCTTGGCGGCGGGGGATGCGGTCCTCCCTCCGCCAAGAAACAGAGAGTCCTGTTCTCCGAGGAGCAAAAAGAGGCCCTAAGGTTAGCTTTTGCACTGGATCCCTACCCCAACATGACTACCATAGACTTTCTGGCGCAAGAACTTTCTCTATCCTGCCGGACTATCACTAATTGGTTCCACAACCACCGAATGAGGCTAAAACAACAACCCACCGCTCCCAACCAGTCCTCTCCCGGTCAGGAGAGCAGCGGGGTGAGTCGGGGCCAGCAAGGCGGATCCCCGgtgcctccccctcccccgccttCCCTGCCTCCACCTCCACCCTCGCCCTTCGATCCCGTCCAGTTCCGACTGTTACTGAACCGAAGGTTGCTGGACCTGCAAAAGGATCGCGCGGCCGGAAACGGGTCCGGCGTCGGAGGGAGTTTGGTGCCGCCCACCTCTCTGCCCTTCCCGTACTTCAACGCGGCAGCGGCAGCCGCGGCGGCTGCAGCTGCTGCGGCGGCCGCCGCAGCAGTCCACCACGCGTCCGGCCCCCGATCGTCGGCCGACAAAGAGGAGCAAGTGAGCGGACTGGACCTCAGCATGTCGTCTCTCAAACGAGAACCCGTGGAGTTCGaagacgacgacgacgacgacatGATGGATGAAGACGAAGATGACGACGGCGCGATGGACGCAACCATGGCGATCTCGTCGATGTCGGCGTCGAACGAAATCTCCGACCTATCCATGAAAGGAGAATCGGATTCCGCAGCCGTGGAATCGGAGCCGAGGCCTCCGGTCCGTTCCGTGCCGCAGGGTCAGCCGAGCGGTAGGTCTTCGCGAAGGAAGCCTGCCGCTCCCCAGTGGGTTAACCCCGAGTGGCAAGAGGTAGTGGACGTGGGAGGCGTGAGTATCAGAGGCGTTGGGAGCGGGGAAGAGAAGCGCGAAGTGATCATAAACGGAGTGTGCGTGATGCAGACGGACGCGCCGTTCGGGGGCGCTGGTGCGGGAGTGGGTGTGACCTCCGGGGTGTCTCCCCGGACGGCgatggaagaggaggatgaggaggaggaggaagaggatgaggaggagggaggtgctGTGGACCACCGAACGGTCGGAAACGACGAAGGACACGAGATGGTCTCGAGGCACGAGGAAGACGAAccgatggaggagggagagggagaagggttgATCGCGGGTCGCAGCGTGGGCGACGCCCGAGAGGAACCTTTGTCTGAAGTGGCGGGAGATGTTGAGGAAGAGGATTCGGCGGCGGCGGGGGAAAGCCCGAGGCTTCCATGTGCGGGCGACGAGGAGAAGGGTGTGGAGAGTGAAGGGGATGTGGCGAGGGAAGACAGAGGTTCGGCCATGATGAGTGACGGTGTTAGTTCGGACGAGAGAGTGGGGTGCGGGGAGAGTGGTGCGGTAAGGGTGGCAGACTGTAGGGACGATGAGGATGAGGCCGCGATGGACGAATCCCTAGAGAAGCAGCTCCAAAAGAGaatgaagagggaggaggaggaggaggaagaggattgGGAGTTCTGA
Protein Sequence
MATHGTSRGGRRRDRGGEGPRNLSLPVTLSSYGPPHRELSAAPPRLPPLSLSFPRSSSSPRPFFVLPLHVCGGGKRVREDQGDRGGSRGPPVSLKVRAGHFGGGEGRPFGGMVGCDGRDRRYQGPIVFFPSGSPHSPLVALIFHHPSRRDVLPPFFISSPFHIPPSLPLHSHLAQPSASHSLLRIRRYEYPGLNSRGTEGTTLCGGSLAKRKDSSSDPLHCPVPLPSSSFPPASFLLPTSLGVTRSTPRFLVSCLFLPFPQYSLTLFSYSRPFAFDPDNLAVSSIPCPCSLREHSLPLSLISFLPLRFCKDTGGIPGFGAARGIGEDSMTEERIVHILNEASHAMKTASASLHGVVLGGVGSGGGGQEDSRSNDDSKSPHHGQSSSPLLGGNGSGKDGSSSQNRRLKKYENDDIPQEKVVRIYQEELAKLMGRRLEDSMRNPRDHHFPSLLFPHFFSGAGAPGGNGGGSTGHPLMDRTQEEIRMALDAYHRELVKLNVAPPPPSSPSSVGPGANMPHPPPPSSAPSPASSSAAMSTTTNSIVSQAGLLALHQHHQQNMQGHNGMAQDLSLPKMPNGGLEGMGMVKKEVLGPVDQHQLQQQQQQQQMQQQQQQMQQQQQQMQQQQQMQQQAANEAIRHAGSAFSLVRPKTEPGLPGAGSQGSGGGSGGASGGQGGCGSTPGASPLGGGVPPSPAPPPTPSSLLVGVGAEDFGPSSLASTGASPLQRMASITNALISAPVVPSHVHGTPSQRPLKAVLPPITQQQFDQFNNLNTEDIVKKVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGGSPRPTKPLSKLSAVMPPSGMDPVSKAMDAVVSSSPSSSAVLSAVVAAGQMAAAAAAAAAMHHGGGASSTPSHPDTTTSPSALLKRGGHHHHPHMPPHHQHHHPSQGPPQHSPLHHPHLGPHPGAMPPGVPTSAAGMLVSPPPGMGMRSVLHHVPHPIPPPVPQQQMQQSLHPPSSASSSPSSSGAPPPAGALVSPPAPPSSAASTPSSAHHPHPHHPHHHHVQPSVYEMAALTQDLDTQQITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLNDTHNVEKLQHLKNERREANKRRRGSHHGSGGSGGPSGSMGGSSCGVTDNGSDTSSNDTADFYHAGPGSPVGNGSGVSGSTSGGPGMPGGSVGVATPPGPLGHHHNFLHHQQSQAQMLGGGGCGPPSAKKQRVLFSEEQKEALRLAFALDPYPNMTTIDFLAQELSLSCRTITNWFHNHRMRLKQQPTAPNQSSPGQESSGVSRGQQGGSPVPPPPPPSLPPPPPSPFDPVQFRLLLNRRLLDLQKDRAAGNGSGVGGSLVPPTSLPFPYFNAAAAAAAAAAAAAAAAAVHHASGPRSSADKEEQVSGLDLSMSSLKREPVEFEDDDDDDMMDEDEDDDGAMDATMAISSMSASNEISDLSMKGESDSAAVESEPRPPVRSVPQGQPSGRSSRRKPAAPQWVNPEWQEVVDVGGVSIRGVGSGEEKREVIINGVCVMQTDAPFGGAGAGVGVTSGVSPRTAMEEEDEEEEEEDEEEGGAVDHRTVGNDEGHEMVSRHEEDEPMEEGEGEGLIAGRSVGDAREEPLSEVAGDVEEEDSAAAGESPRLPCAGDEEKGVESEGDVAREDRGSAMMSDGVSSDERVGCGESGAVRVADCRDDEDEAAMDESLEKQLQKRMKREEEEEEEDWEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00797072;
90% Identity
iTF_01504564;
80% Identity
iTF_01504564;