Basic Information

Insect: Udea olivalis
Gene Symbol: ush
Assembly: GCA_947369235.1
Location: OX376343.1:3322342-3331664[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.012 1.2 10.5 0.1 1 20 156 175 156 177 0.93

2 9 9.2e-05 0.0091 17.2 1.1 1 23 215 237 215 237 0.99

3 9 0.068 6.8 8.1 0.3 3 20 270 287 269 289 0.93

4 9 0.038 3.8 8.9 4.3 2 21 528 547 527 548 0.95

5 9 0.0059 0.59 11.5 0.2 3 20 577 594 575 596 0.90

6 9 1.5 1.5e+02 3.9 0.1 2 23 624 645 623 645 0.94

7 9 0.0086 0.85 11.0 1.3 1 23 651 673 651 673 0.99

8 9 0.22 22 6.5 0.9 1 23 712 735 712 735 0.96

9 9 0.18 18 6.8 0.7 2 20 768 786 768 788 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.012	1.2	10.5	0.1	1	20	156	175	156	177	0.93
2	9	9.2e-05	0.0091	17.2	1.1	1	23	215	237	215	237	0.99
3	9	0.068	6.8	8.1	0.3	3	20	270	287	269	289	0.93
4	9	0.038	3.8	8.9	4.3	2	21	528	547	527	548	0.95
5	9	0.0059	0.59	11.5	0.2	3	20	577	594	575	596	0.90
6	9	1.5	1.5e+02	3.9	0.1	2	23	624	645	623	645	0.94
7	9	0.0086	0.85	11.0	1.3	1	23	651	673	651	673	0.99
8	9	0.22	22	6.5	0.9	1	23	712	735	712	735	0.96
9	9	0.18	18	6.8	0.7	2	20	768	786	768	788	0.92

Sequence Information

Coding Sequence: ATGATGTCACAATGCATAGGCGCAGACCCACAGCAGGCAGCTATCAGCGCGTCTCACAGCACACCGCTGTACGTTAGTGCTATCGCGCGCGAAGACATCAGAGATTTATTCGTCATGCTGCAGGACGTGGACACTATAAGGAAATGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACGCCGAGCTCGGGAGGGGAGCGCGCGGCCTCCAGCAGGGGCGCGTCGCCGGCGTCGGGGGGCTCGCCTGACGCCTCTCCGCCGCGTCTGCGCCTCAACACCAGCCTAGCCACTGACCCTGCTTTGGCGCCTCAGGCTGCCGCTTTGAAGCACGAACCTCCATCACCTTCGCCGCCGCCGGTCCCTCCGCCAATTCCCCAGACGAGGGACTTCCTAGCATTACAAGCGTCTTTCCCCGCGCTGTTCCCAGTTGCGCCGGCACCCGGGTATATTTGTCAACCCTGCGGTATCCGCTACTCTTCCCTGAGTACACTACAGGCGCACCAAGAACATTACTGCTCTAATAGAAGGCCGAAGCCAACGGAAGGAACTGACGCGCCAGCAGACCCTAACGCAGACGAATCAAGCAGCGATGCGAAGACTCCGCGGCCAGCCGGCAGGCAGTACACGTGCAATCTGTGCTCGTACAGCGCTGACAAGAAAGTCAGTTTGAACCGTCACATGCGTATGCACGCGCCCTCGCCCGCAAGTAGCGGAACGCCTGCGCCGACACCGACGTCAAACGGTGAACTGAGTTCGACGGACGGCCCTTTAGTGCAAGACCGCTACTGCGCTGACTGCGACATCCGCTTTAGCTCAATCAAAACATACAGGGCACATAAAGCGCATTATTGCAGCACTAGGCAAGTAGTGAAGCAAGCGGTTGCAGCAGCAAGAGCAAGCTCGGCCACTTCAGGCTCCGCCCCTCCGTCTCCAGGAGCTACCCCTCCAGCCCAAGCGCAGTACGCACTCGCACTACCGACTAATCCGATACTCATCGTACCTTATTCATTATTAAGGAGCGCTAGCACGCTCCCCGGAACGACGCTACCAGACCCGGACACGCCATGCTTTTTGTTACCAAACGGAACATTCCAGCCGCTGAGCCGCGCGTTACCAAATATGAACTCAGATGGCAAAGAAACTGAAGTACTTAAATCTGCGAATAGGCCTAGAGAACCATCGAGAGATGGAGCCACGCCGCTTGATTTGAGCGTGCGGCGTTCGCCAGAATCTGCAACGACTGATGAGCACGAGAAAGAGAACAGGTTAAGGTCAACGACACCCGAACAGATTGTATGTGCTCCTTCGCTTCCAGGGTCGCCAGGCACGCCATCTCCGTCCCGGCGGTCCTCTTCTCCAAGCGGAGAGAGTTCGCCCAAAAGGCGGAGACGGAATTCGAGAGGGCCGACACCGAAACCGCCCAGCGTGCCATCTCCTCCAGAGGAGAAGTTCACTCCAGTAGCCCCACCGCCGATCATTAGCCCGGCGCTAGCACTGCGATTAGCAACAGAGCTGCCTGCTAATGCATCTCCTCAAGTCATGGTAAAGCAAGGCGTGTCTAAATGCAAAGAATGCAATATTGTCTTCTGCAAGTTTGAGAACTACAGAGTCCACAAGCGGCACTACTGCCCGTCGGGTGGTGGCGAGGAGCGGGCCAGCCCCGCGCCGCCAGAGCCAGGGCCGCCGCCGCAATACCGTCAACTGATTTGTTTGGCTTGCGGGATTCACTTCAGTTCGCTGGACAACTTGACGACGCATCAGTCGTACTACTGCACAAAGCGGGAGACTCGGTCTCCGCGGGCGGTTCCTGAAGTTCCTCGGCCGTCCTCGGGATCAGAAGGTGGATGGAAGTGTCCGTGCTGCGAGGTGGTGTCGCCAACGGCGGCGGCGGCGCAGCGGCACATGGAGTCGCACGCGGGGGTGAAGGCCTTCCGCTGCACCATCTGCCGGTACCGGGGCAACACGCTGCGAGGCATGCGCACGCACATACGCATGCACTTCAACAATAAGAAACCTGCTGATTTACAGGAAGAGAGCTACATTGCCTGCGTGCTCGAAGAGGACAGCCGCGAGGTGACTTCACCCAGCCCAGCCGTGGGCGGAGAACGGGTCCACCGCTGCAGCAGCTGTGCATACACGTCCACATACCGCGGCAACGTCGCCAGGCACGCCCGCCTCGTCCACGCAACCGAAGACCCCGAACCAGAGGAGCAGACCTCGCCGATCCCCGTCGTAGATATAAAGAAGGAACCAGAGGCAGAAGGAGAGGAAACTCCCAACTACTGCAAGTCCTGCGACATCTCGTTCAAATATGTGAACACGTATAAAGCGCATAAGCAGTTCTACTGCACTGCCAACAACCAGGAGGCGGCTGCGAACAACAACGTGCCAGCCCCTCCAGCTGTCAGGGTCACTGACACGCCGGTGCTATGA
Protein Sequence: MMSQCIGADPQQAAISASHSTPLYVSAIAREDIRDLFVMLQDVDTIRKCEDEEWGNESEAMPGEPRTPSSGGERAASSRGASPASGGSPDASPPRLRLNTSLATDPALAPQAAALKHEPPSPSPPPVPPPIPQTRDFLALQASFPALFPVAPAPGYICQPCGIRYSSLSTLQAHQEHYCSNRRPKPTEGTDAPADPNADESSSDAKTPRPAGRQYTCNLCSYSADKKVSLNRHMRMHAPSPASSGTPAPTPTSNGELSSTDGPLVQDRYCADCDIRFSSIKTYRAHKAHYCSTRQVVKQAVAAARASSATSGSAPPSPGATPPAQAQYALALPTNPILIVPYSLLRSASTLPGTTLPDPDTPCFLLPNGTFQPLSRALPNMNSDGKETEVLKSANRPREPSRDGATPLDLSVRRSPESATTDEHEKENRLRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRRRRNSRGPTPKPPSVPSPPEEKFTPVAPPPIISPALALRLATELPANASPQVMVKQGVSKCKECNIVFCKFENYRVHKRHYCPSGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRAVPEVPRPSSGSEGGWKCPCCEVVSPTAAAAQRHMESHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREVTSPSPAVGGERVHRCSSCAYTSTYRGNVARHARLVHATEDPEPEEQTSPIPVVDIKKEPEAEGEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQEAAANNNVPAPPAVRVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_01280873;
80% Identity: -