Uoli009918.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376368.1:7502133-7503965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.3 29 6.1 2.0 1 23 42 64 42 64 0.97 2 16 2.8 2.8e+02 3.0 2.1 2 12 92 102 91 118 0.79 3 16 2.5 2.5e+02 3.2 1.7 5 23 139 158 135 158 0.89 4 16 0.61 60 5.1 4.4 1 23 163 187 163 187 0.96 5 16 0.00022 0.022 16.0 0.2 1 23 191 214 191 214 0.92 6 16 0.03 3 9.3 0.6 2 23 217 239 216 239 0.95 7 16 0.87 86 4.7 0.1 2 19 246 263 245 266 0.91 8 16 0.0012 0.12 13.6 1.1 1 23 314 337 314 337 0.93 9 16 0.82 81 4.7 0.1 2 23 366 388 365 388 0.94 10 16 0.0019 0.19 13.0 0.5 1 23 410 433 410 433 0.93 11 16 0.00011 0.011 16.9 0.1 3 23 440 461 438 461 0.93 12 16 0.00021 0.02 16.1 1.9 1 23 466 489 466 489 0.91 13 16 0.011 1.1 10.6 1.9 3 23 496 517 495 517 0.94 14 16 1.7e-05 0.0016 19.5 2.6 1 23 521 544 521 544 0.98 15 16 0.05 5 8.6 1.2 2 23 551 572 550 572 0.95 16 16 0.0098 0.97 10.8 2.4 1 23 578 600 578 600 0.97
Sequence Information
- Coding Sequence
- ATGATTTTCATCTTTTCAGATGAATATGGGCCGACCTCTTACAGTGCTAATAAAATCAGGAGAAGGAATCTGACAACGTTGTTTAACAACACAACTATCATCCCGTTCAAATGGCGAAGCAAATATATTTGCTTTTACTGCGGCGATTACATAGCCTCTTATCACGACCTGAGAACCCACACGAAAAGCCACGGCGACTGCACAGAAAAAGACAGAGCCATGAGACTCGTCCGAGCTAAAGATTCTGAAGTCAAAATTGACGTCTCCGACATGACTTGCAATCTTTGCAACGAATCCTTCTCTGCCTTTGACGATATTATCTTCCATTTGAATAACAAGCATAGAAAACTTCATTATAACAGAGATGTAGATTTAACTTTAACCAAATATAGGCTTGTTGATCTCAAATGCATATCCTGTGACGAAAGCTTCAGCTGCTTTAGCAGGTTAATCAGACATGTGAACGTTAAGCACCCAGTTAATTGTTTTACTTGTGATTATTGCGAAAATAAGAATTTTAACAAAAAGAGAGATTTAGAATGTCATATACGTAATCGTCATAAATCTTCCTATGTTTGTCCAAAATGTGTTATGGTTTTTCCCAATAATGCAGCATTGCAAAAACACAAAGCACACGCCCACGCCTCCACGTGCAACGTGTGCTTCGAGCCCTTTTCATCTGACAGCAAAAGAGTTAATCACATGAAAGAATACCATCTAGACAATGAGGTCTTGCAATGTGGCTTTTGCCTAAAAACACTTACTACCAAAATAGCTTTCTTGAACCATGCAGCTAAATGCAACGTAAATGATGATTCGAAACAAAACACAGACTCCATCGACTCTGAAAAGAAGCCTAATGTTGCTCAAATAAGGAATAACATTGCTTGTATAGTGAACATGTCTACTGCTCTTCCATTCAAGTATTTCATGAGCAAATTCCGATGCTTTTACTGCCCGAAAGACTTCCCCGAATGCGATGATTTGAAAGAGCACACGGTTGTAGAGCATCCAAAGTGTGATAGTAAACTTAAGTCTATGAGACTTAGGAGCAGAGAGTACGGACTTAAAATCAAATTAGATATAGCATCGCTATCTTGCAAAGTATGCTTTGAGCCAATACAGGATTTAGAAACTCTGATTAACCACTTGGTAACAAAACATAAAGCGCAGTATGATAAAACGGTTGACAATAATTTGCAACCCTTCAAATTAATAAAAGACAATTTTGCTTGTCCATTTTGTGTAGAAGTGTTTAGATATTTCAGTAGTCTTTTAAAGCATGTGAGTCAAAGTCATACAGATAACAGAATAATTTGCGTTTATTGTGGGAAGGCATTTAGGACGGACCCAAGCTTGCGCGCCCATATATCCCTGAGACATAAGCCGCGCAGATACAAATGCAAATCTTGTGATTTGTATTTTACGAGCAAATCATCTTTGCAGAATCATTCGGGAAAGGCGCACGGTACTAAAGTCGCTGATTGCCCGGAGTGCTGCGAGAAGTTCACATCGCAGTATTCCATGCAGAGGCATCTGATGTTTGTTCATGGTATGGGATATAAGTGTTCGTACTGTGGAAAATTATTCACTAAGAATTCGTTCATGGTGAACCACATTCGGAGGACGCATCTCAAAGAGAAGAATGTGGAATGTTCAATATGTTTTGAGAGGTTTTTTGACGTGCATCTACTGAGAATGCATACGGTAAAACATGTCGGCGAACGGAATTTCCATTGTGATATATGCGGAAAGAAATTCCTGTGGAAGAAGAATCTTAAAGGGCACATGTCCTCCCACGTTGTTAAGGTTAGAAAGGAAGCGCGAACGTGA
- Protein Sequence
- MIFIFSDEYGPTSYSANKIRRRNLTTLFNNTTIIPFKWRSKYICFYCGDYIASYHDLRTHTKSHGDCTEKDRAMRLVRAKDSEVKIDVSDMTCNLCNESFSAFDDIIFHLNNKHRKLHYNRDVDLTLTKYRLVDLKCISCDESFSCFSRLIRHVNVKHPVNCFTCDYCENKNFNKKRDLECHIRNRHKSSYVCPKCVMVFPNNAALQKHKAHAHASTCNVCFEPFSSDSKRVNHMKEYHLDNEVLQCGFCLKTLTTKIAFLNHAAKCNVNDDSKQNTDSIDSEKKPNVAQIRNNIACIVNMSTALPFKYFMSKFRCFYCPKDFPECDDLKEHTVVEHPKCDSKLKSMRLRSREYGLKIKLDIASLSCKVCFEPIQDLETLINHLVTKHKAQYDKTVDNNLQPFKLIKDNFACPFCVEVFRYFSSLLKHVSQSHTDNRIICVYCGKAFRTDPSLRAHISLRHKPRRYKCKSCDLYFTSKSSLQNHSGKAHGTKVADCPECCEKFTSQYSMQRHLMFVHGMGYKCSYCGKLFTKNSFMVNHIRRTHLKEKNVECSICFERFFDVHLLRMHTVKHVGERNFHCDICGKKFLWKKNLKGHMSSHVVKVRKEART
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -