Uoli013746.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376348.1:17132954-17147153[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.27 27 6.3 0.6 1 11 173 183 173 187 0.91 2 11 2.3 2.3e+02 3.3 0.3 2 23 209 230 208 230 0.94 3 11 3.1 3.1e+02 2.9 1.6 2 23 239 261 238 261 0.90 4 11 0.039 3.9 8.9 0.3 3 23 269 289 268 289 0.97 5 11 0.018 1.8 10.0 1.3 1 23 294 316 294 316 0.94 6 11 2.2e-07 2.1e-05 25.4 0.8 1 23 322 345 322 345 0.92 7 11 1.3e-05 0.0013 19.8 2.2 2 22 351 371 350 371 0.95 8 11 5.1e-05 0.0051 18.0 0.2 2 23 379 400 378 400 0.96 9 11 3.5e-05 0.0035 18.5 1.6 1 23 406 428 406 428 0.98 10 11 4.1e-06 0.00041 21.4 0.5 1 23 434 456 434 456 0.99 11 11 0.01 1 10.7 6.2 1 19 462 480 462 485 0.89
Sequence Information
- Coding Sequence
- ATGTTAGCCACTTCAACAAAGGTTAAAATAAACTCGTGTCGTGTATGCCTAAAAACAAAATTTACGGATGGAGTCTCGTTTGATGATGGAGACGGTTTGTTAAAAATGTACGAGTTTTGTTTTGGACTAACTGTGTCTCCTCAAGACCTACCCAGACAATTATGTGGTAATTGTGTGAAAAAAATGGAAGATTTTTCCAAACTCAAATTACAGTCCCACAAATCAGACAGGCTTTGGAAATCAATTATATCTACTAGACTGTCCTGCCATGCTAAAAAATGGTCCAAAATAAACAATAAAGAAGACAGCTCAGACTTTGATTATGATGAATCTATAGACCACTTTGATTATAATGTGGATGAACAAGTGAACTCAGTAATTATTAACATTGTGAATGATGTAAAGAATGAACCTATAGAAGAAGAACTGGAACAGAAAATAGAAGAAATCCTGAATATTGATATTGAAGATGAATTAGTAGAACATGCTGAAGATTCCAAATGTGATAAAAAACCATATGAATGTAACCATTGCAATGCTGTGTTCAGTTTGTGTGAAATGAAATCGTTCAGCATGGAAGAAATAAAAGAACATTTGGATGGCCACAGTTCAAATAATGATTTGTCTTGCAAACTTTGTGAATATAACGGAAGAGACTTTGCAGATATGGTATCGCACAGATACTCACACCAACCAAAAAGGAAATGGATGTTGAACTGCCATAGTTGCAACAAGAAGACTGTAACCATCCTAGCTTTGCAATTTCACTATCGGTCGGTCCATCTCAAGAAAAAGGGCGGCCTGTGTACAGTCTGCAATAAAGAGTTTGGCTCCTACAATCCTTGGAGAAACCATGAGAGATGGCATAAAACTGAGGGCTTCGCTTGTGATCATTGCGGGAGACGGTTTTTGTTCAAAAATCAAATTAGAGCACATTTGGAAGAACATTCAGATTATAAAGGTTTTGTCTGCGATATTTGCGGAAAAACTTTCAAGCGAAGAAGTAATCTCCTGCTTCACATAGGCCACGTGCACGACGACAAACGAGTGACTTGCTCACACTGCAGTAAAACATTCAAAAATAAAGCGACTCTCAAAGATCACTTGCGTAGGGAGGACAGAGTAAAGACTATTGAATGTAAAGTTTGTTCAAAACGCTACCCTTCTAAGAGATCTCTAGAGGTACATATGATATGGCATACCGATGAGCGGCCGTTCGTGTGCCATTTGTGCGGATCCGCGTACAAAGCGAAATCCCAGCTGAGAATCCATTTACGGAAACATACAGGAAATATGCCATACAAATGTACACTCTGCACGAGGGCGTTCCCATCCTCGAATCAATTAAAGGTGCATCTGAACGTGCATTCTGGTGTTCGTCCGTACAAATGCCCGTACTGTGAAAAAACATTCCATAACAAGAAGAACGTTGTCGACCACTGCTCGAAGAGGCACAACGTTTTTGATGTTGAGATTGGAGGAGTCAGGAAGGCGGTTACCAAAAAAGAGAGTGTAGTGAGTCATACAGCGGTTGTATAG
- Protein Sequence
- MLATSTKVKINSCRVCLKTKFTDGVSFDDGDGLLKMYEFCFGLTVSPQDLPRQLCGNCVKKMEDFSKLKLQSHKSDRLWKSIISTRLSCHAKKWSKINNKEDSSDFDYDESIDHFDYNVDEQVNSVIINIVNDVKNEPIEEELEQKIEEILNIDIEDELVEHAEDSKCDKKPYECNHCNAVFSLCEMKSFSMEEIKEHLDGHSSNNDLSCKLCEYNGRDFADMVSHRYSHQPKRKWMLNCHSCNKKTVTILALQFHYRSVHLKKKGGLCTVCNKEFGSYNPWRNHERWHKTEGFACDHCGRRFLFKNQIRAHLEEHSDYKGFVCDICGKTFKRRSNLLLHIGHVHDDKRVTCSHCSKTFKNKATLKDHLRREDRVKTIECKVCSKRYPSKRSLEVHMIWHTDERPFVCHLCGSAYKAKSQLRIHLRKHTGNMPYKCTLCTRAFPSSNQLKVHLNVHSGVRPYKCPYCEKTFHNKKNVVDHCSKRHNVFDVEIGGVRKAVTKKESVVSHTAVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -