Uoli015656.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376367.1:2135472-2161020[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0073 0.72 11.2 1.5 1 23 207 229 207 229 0.98 2 12 0.00057 0.057 14.7 1.1 1 23 236 259 236 259 0.97 3 12 4.8 4.8e+02 2.3 1.8 1 23 263 285 263 285 0.94 4 12 0.0002 0.02 16.1 2.9 1 23 290 313 290 313 0.98 5 12 0.032 3.2 9.1 0.9 1 23 317 340 317 340 0.94 6 12 0.014 1.4 10.3 0.2 3 21 354 372 352 377 0.92 7 12 2.1 2.1e+02 3.5 0.1 3 23 387 407 386 407 0.84 8 12 1.1e-05 0.0011 20.1 0.1 2 23 427 449 426 449 0.96 9 12 3.6e-06 0.00035 21.6 1.8 2 23 459 480 458 480 0.97 10 12 0.00024 0.024 15.9 0.3 1 23 486 508 486 508 0.98 11 12 2.5e-07 2.5e-05 25.2 1.4 1 23 514 536 514 536 0.97 12 12 4.9e-06 0.00049 21.2 0.9 1 23 542 565 542 565 0.97
Sequence Information
- Coding Sequence
- ATGACTAATTTAATGGCTTGCAGAATGTGTTTAGCTCTTGACACGCGCTTATACATTTTAACTGATACACCGCTGCAAGAAACCTATGAGAAAATTACTAATTTATCGCTTCAGACTACGGATGGGAGATCAGTCATGGCTTGCCATATTTGCCATCACCTGCTCAAGAAGTGTCATCGGTTTATGGAAAAGTCATTGAGAGCTGATCAATTACTTAGTCAAATACTCAACAGTGGATTGCAGCTAACAGAAAACTCAATTACTCTCATCGACAAGTCTCAAGTGTCTTCAACGTTGGCTGTGACACCGACAGAGATAATGAGTTGTATCTCAGAAGTTGCAATGGCACAATTGCCTGTCAAAGATGAGTACAAGGTTAAAACTGAGATAGAAATGGATACGAAGGAGGAGGAAGATGGTGTGTTATCAGCAGAATCAGAAGATGATATTCCTCTGCATAAAATCAAGTTGGAAAAAAAAGAAGTGAGATTGGATAAACGCAGGCTCAGGAAGAAAGAAGGTCTCAAGGCAGTCGCACTGGAGATCATCCTAACTAAAGAAGAGCAACTACAGCAGATGATGGAAAGATCCAAGTCTTTAAACTATTTAAATTCTCCATACAAATGCAATCTGTGCTACAAAGGGTTTGTGGAGACGAAAGCCTTTGAGAATCACAAAGAAAAACATGACGAGAGCAGCGGGCAGTTCGAGTGCGACGTCTGCCGCATGCGCTACGCGACGGCGCGGCACCTGCGCACGCACGCGCTGACGTCACACGCGCGGCAGTTCGCTTGCGGCAAGTGCCCGCATCGCTCGCACACCGCAAACCAGGCCAGGGAACATGAGAAGTGGCATAACGGGTACACCTACGAGTGTCAGCTCTGCAGTCAGAAGTTCAGGAAGCCAACCTCGTACCTCACGCACATGCGCAAGCGCCACCCCACTTCGCACGTGTGCCGCGCGTGCGGCGAGAGTTTCGTTGGCCGCCATGGGCTGCTCATGCACACCAGCAAGGCTCACAAAAGGGAGGACCAGAAAAGCACAGATTCTCAAACATTCTGCTCAGAATGCAACATACAATTCGCAAGTTTGGAGGCGTGGAAGAGGCACATACTGAGCTCTATCAAACACGCATTAGGCACTGGGAGTAGTAATACCTGCCTAGCCTGCGGTGTGACAGTTCCGGCGGGAACATCACTCCGGGAACACTTGCGCTCGCACGAGCCGGCGGACAAGGCCGCGCGGCCGCCGCGGGACAAGGCCTCGATGGCGCAGCTGCCTTGCGAACAGTGTGGAGCTAATTTCATTAACCAATCAAAGCTGCAAGCTCACATCAAGAGAATACACCTCGGAATGAAATACAACAAAAATATTGTTTGTGAAGTTTGCGGCAAGAAGTGCACTTCAAACGCCTCCCTAAAATACCACCAACGCACCCACACCGGCGAGCGGCCGTACGCCTGCGCGCAGTGCCCCAAGCGCTTCGCCGACAACAACCAGCGCCGCATCCACGCGCGCACGCACTCCGGCGAGCGGCCCTACTGCTGCGCCGTCTGCGGGAAGAGCTTCAGCCAGAAGCCGGCGCTGAACCGGCATTATAGGGTGCACACCGGGGCGAAGCCCTACGACTGCCAGTTCTGCCCGAAGACGTTCAGCCAGTCCAACTCACTCAAGCTTCACGTCAACACCATTCACCTCAAACTGCCTCACGCCAAGAGAAAGCCGGTGACTGAACCACAAGATCTGTAG
- Protein Sequence
- MTNLMACRMCLALDTRLYILTDTPLQETYEKITNLSLQTTDGRSVMACHICHHLLKKCHRFMEKSLRADQLLSQILNSGLQLTENSITLIDKSQVSSTLAVTPTEIMSCISEVAMAQLPVKDEYKVKTEIEMDTKEEEDGVLSAESEDDIPLHKIKLEKKEVRLDKRRLRKKEGLKAVALEIILTKEEQLQQMMERSKSLNYLNSPYKCNLCYKGFVETKAFENHKEKHDESSGQFECDVCRMRYATARHLRTHALTSHARQFACGKCPHRSHTANQAREHEKWHNGYTYECQLCSQKFRKPTSYLTHMRKRHPTSHVCRACGESFVGRHGLLMHTSKAHKREDQKSTDSQTFCSECNIQFASLEAWKRHILSSIKHALGTGSSNTCLACGVTVPAGTSLREHLRSHEPADKAARPPRDKASMAQLPCEQCGANFINQSKLQAHIKRIHLGMKYNKNIVCEVCGKKCTSNASLKYHQRTHTGERPYACAQCPKRFADNNQRRIHARTHSGERPYCCAVCGKSFSQKPALNRHYRVHTGAKPYDCQFCPKTFSQSNSLKLHVNTIHLKLPHAKRKPVTEPQDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01503210;
- 90% Identity
- -
- 80% Identity
- -