Uoli014458.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376365.1:10795373-10800611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00091 0.091 14.0 4.4 1 23 153 176 153 176 0.97 2 19 0.0002 0.02 16.1 1.1 1 23 185 208 185 208 0.96 3 19 0.0026 0.26 12.6 1.0 2 23 221 243 220 243 0.97 4 19 0.0069 0.69 11.3 3.2 1 23 252 275 252 275 0.95 5 19 0.00017 0.016 16.4 1.9 1 23 287 310 287 310 0.97 6 19 0.00024 0.024 15.9 0.5 2 23 338 360 337 360 0.96 7 19 0.0012 0.12 13.7 1.2 2 23 370 392 369 392 0.96 8 19 0.047 4.7 8.6 1.5 3 19 398 414 396 417 0.92 9 19 0.00031 0.031 15.5 0.4 2 21 422 441 421 444 0.95 10 19 0.021 2.1 9.8 1.7 3 23 454 475 453 475 0.97 11 19 0.00076 0.075 14.3 2.9 1 23 480 503 480 503 0.95 12 19 0.00023 0.022 15.9 0.8 2 23 515 537 514 537 0.97 13 19 0.0031 0.31 12.4 0.4 1 23 560 583 560 583 0.92 14 19 0.035 3.5 9.1 0.1 2 23 590 611 589 611 0.96 15 19 0.0016 0.16 13.3 0.9 2 23 618 639 617 639 0.97 16 19 8.2 8.1e+02 1.6 1.9 3 23 647 669 645 669 0.90 17 19 3.8 3.8e+02 2.6 0.8 2 23 677 698 676 698 0.94 18 19 0.027 2.7 9.4 0.1 1 23 705 727 705 727 0.96 19 19 0.18 17 6.8 2.1 1 23 733 756 733 756 0.96
Sequence Information
- Coding Sequence
- ATGGTGTCAATAAAACGAGAATTAGATGTAACAATAAAGGATGAGCCAGAAGAATATATTAGAAAAGACCCAACTACTTTCTTGCCAGAAGAACCAATGACATATGAAATAAAAGAGAAAAAGAAAAAAAAGAAGAAAAAGAAAAAACAGGAAGATCCATTCAAGGGTATACAAGATGAAAACCAGGATACTTTATTAGAACCATATTTAGAATTAAAATTGGACTCAGAAGTGAATATAAAAGTTGAGAATATTGAAGTGGATTTGGATTTCAAAGATTATGCAAACAACTCCGACCTCATGGTTGAAGGTCCCCTTAGTGAAGACAGCCAAAAACCGGAAGTAAAGATAGAAGAAACAAATAGGGAAGCAGTCTTACTCACTTTTGAGAGTGTCATCAATGACCATTCAATCCTAGGATACGATCCCCCAGAAGAACCCATCATTTCAGCCTCATACATGTGCAAAGTGTGCCACCTAGTCTTCCAGTCCAACCGGACTCTCCGCATGCACCAAAAGCGGAAACATAAAGCCTACAGACATTCATTCAAACATATATGTGATAACTGTGGCATGTCCTATGAAATGAAGAACAGTCTTATAGCTCATATGAAGAGGAAACACGGACCTGGTGCTAATCCGGATGATAATGAAGAAAAGACTTGTGAAATCTGCGCTTTAGTCTTCAAAGGCACATCCCGTTTGAGGATGCATATGAGGAGAAAGCATGGCGCTTTTGCGGACTCTTTCAAACATGCTTGCAAGCATTGTGGACTAACATACGATAAGTACAGAAGTCTTATAGTGCATGTTCAAAGAAAACATTCTAAAACGAAGAAACCACCTTCGAACCAATGGTTTAACTGTCCATTCTGCGCAAAGATCTTTTCTAGGAGAGAAACGTATTCTAGACACATACAAAGGAAGCATCAGGTTTTAGAGGAAGATGCAAATAATATTCCAGCTTCTGTCGACTTAGAAAGTTGCCGGAACCAAGAAACAGGTGAAATACCTTGTAAACAATGTCCTCTAGTATTCTCATCAATAACTTTCCTAAAACTGCATATGAGGAGGAAGCATAATGCCCTAAAAGATGACTTCAGACTTAAATGTAGAATTTGCAATCTCTCCTACGAGAAGATTGAAAGTCTTAAACGGCATGTTAGAAGAAAACATGACAAAGCTTCCCACTGTGAAGTGTGTAATAAGCAGTTTGATACAAGAGAGAGTTATTTAAATCATTCTCACGTGAAAGTTATTAAAGAATGTAATATCTGTGGCTTGATCTTTGCTTCCCAAGGTGGATTGGCAAAGCATATACGCTGTACGCACAAAATAGACAGTCCTAAAGTGGCATTCTGCAAAATATGCAATGAAGGGTTCCATGATAGAAGAATGCTCAAACCTCATATGATGAAAGTGCATTTGAAGGTCTCATACACTTGTGTACATTGCAATAAGATTTTCAAAGCTAAAGAGAGCTATCGACGCCATGTTTTACTAAAACATCCAACGAATAACCCTTTAAACGTTCAAATGCAGAAATGTGACCAGTGTTCAGAAGTTTTTGATGATGAATTTGAATTGTGTCGCCATATAAATATGGTGCACAATGTGAATACAGACGACAAATCGTTCTTTGACGTTAAAAAAGAAGAAGCTGATATCAAAGACTTATTCCAATGCACTAAATGCCCTGAATTGTATCCTAACTGGGAGCAGTTAAAGCTACATTTTGAACAGAACCACCGTCTAGCAGGAGAAACTCAGTGCCAAATTTGTGGTGAAATAATCAGAGGCACCGAACTCCAAAAGCATATAAAAACTGTACATACAGACAGCGAGTCTCTTCAGTGTAAATATTGTAAATTTGAAACCGCTAACAAAGCGAGTTTAACTCAACATGTCTTGAGGCACAAAAACGCAAAAACTTTACATTGTGAAGTCACTGGTTGTAAATATAAAAGTTACTATGATGGCGCAATGCAGAAGCATAGGAAAAAACATATTGAGTTAGGAGTTAAGCTGCAATGCACTCAGTGTCCGTTCCAGACGATGAATAAATACATTCTGAAGTATCACGAAGAAACCCATATGACCGGGAAGAAGCGGTACGCTTGTGATCAATGTGATTATGCTACAATACTTCCAGCTAATTTAGTTCAGCATAAATATAAACATTCAAATGTGAAAAGATTCAAATGTGACGTCTGTCCATTTGCTACAAAGTACAATACGTCTTTGCGTTTTCATGTTAAGAAGAAACACTGTGATTTACCTAGTTTCAGTTGA
- Protein Sequence
- MVSIKRELDVTIKDEPEEYIRKDPTTFLPEEPMTYEIKEKKKKKKKKKKQEDPFKGIQDENQDTLLEPYLELKLDSEVNIKVENIEVDLDFKDYANNSDLMVEGPLSEDSQKPEVKIEETNREAVLLTFESVINDHSILGYDPPEEPIISASYMCKVCHLVFQSNRTLRMHQKRKHKAYRHSFKHICDNCGMSYEMKNSLIAHMKRKHGPGANPDDNEEKTCEICALVFKGTSRLRMHMRRKHGAFADSFKHACKHCGLTYDKYRSLIVHVQRKHSKTKKPPSNQWFNCPFCAKIFSRRETYSRHIQRKHQVLEEDANNIPASVDLESCRNQETGEIPCKQCPLVFSSITFLKLHMRRKHNALKDDFRLKCRICNLSYEKIESLKRHVRRKHDKASHCEVCNKQFDTRESYLNHSHVKVIKECNICGLIFASQGGLAKHIRCTHKIDSPKVAFCKICNEGFHDRRMLKPHMMKVHLKVSYTCVHCNKIFKAKESYRRHVLLKHPTNNPLNVQMQKCDQCSEVFDDEFELCRHINMVHNVNTDDKSFFDVKKEEADIKDLFQCTKCPELYPNWEQLKLHFEQNHRLAGETQCQICGEIIRGTELQKHIKTVHTDSESLQCKYCKFETANKASLTQHVLRHKNAKTLHCEVTGCKYKSYYDGAMQKHRKKHIELGVKLQCTQCPFQTMNKYILKYHEETHMTGKKRYACDQCDYATILPANLVQHKYKHSNVKRFKCDVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01503202;
- 90% Identity
- -
- 80% Identity
- -