Uoli009914.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376368.1:7480366-7485686[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00063 0.063 14.5 0.5 1 23 24 46 24 46 0.98 2 21 1.1 1.1e+02 4.3 0.0 2 23 72 94 71 94 0.94 3 21 0.95 95 4.5 3.9 2 23 117 139 116 139 0.96 4 21 0.0055 0.55 11.6 7.5 3 23 147 167 146 167 0.97 5 21 0.0078 0.77 11.1 0.7 2 23 173 195 172 195 0.95 6 21 7.6 7.6e+02 1.7 1.1 1 23 199 222 199 222 0.89 7 21 1.3e-05 0.0012 19.9 0.6 2 23 229 251 228 251 0.97 8 21 2e-05 0.002 19.2 0.6 3 23 259 279 257 279 0.96 9 21 3.2e-06 0.00032 21.7 0.5 1 23 285 308 285 308 0.98 10 21 0.00013 0.013 16.6 1.5 1 23 349 371 349 371 0.98 11 21 0.027 2.7 9.4 1.3 2 23 442 464 441 464 0.92 12 21 0.00041 0.041 15.1 0.0 1 23 473 496 473 496 0.94 13 21 0.064 6.4 8.2 0.2 2 23 592 614 591 614 0.92 14 21 0.095 9.4 7.7 2.0 3 23 638 659 636 659 0.93 15 21 0.059 5.8 8.3 2.5 1 23 665 688 665 688 0.93 16 21 0.0017 0.17 13.2 3.6 2 23 692 714 692 714 0.91 17 21 0.062 6.1 8.3 0.6 1 23 717 740 717 740 0.94 18 21 0.00033 0.033 15.4 0.4 1 23 747 770 747 770 0.95 19 21 0.00019 0.019 16.2 0.3 3 23 778 798 776 798 0.95 20 21 0.0029 0.29 12.4 3.7 1 23 804 826 804 826 0.96 21 21 0.00017 0.016 16.4 0.4 1 23 832 854 832 855 0.92
Sequence Information
- Coding Sequence
- ATGAGAAATAACATAGTTCAAGTGTTGTCCAACTCGTCTGTTATGCCGTTCAGGTGGCTGAAAAGCTCCTACAGGTGTTTCTACTGCTACGAAGTGTTCCAAGAGCCAAAAGACTTGAAAATTCACCAAGAAGTCCACATAAACGATAATTCAAAACTCAACTGTATGGATAACTACTGGGATTCCACAGTTCATGTAGATGTTTCCACATTATCTTGTAAACTGTGCCCAAAATTGATTGATGAATTTTACGACCTAATAGACCATTTAATAACAGCCCACAATATATCATTTAATAAAGACATAGGTATTTGTATGAATCCTTTCAAGCTTAACAATATTTCCGTACAATGTGCGTTATGTGGACAACATCATCGCACGTTTGGTCATTTACTGTTGCATATGAATAAAGAGCATAAAGGATACTCACAACTCTTGTGTGATGTTTGCGGTCGGCATTGTAGGAATAAAAGTCATCTTAGAGAACACAAAAAAGAGCATGTGAGTAAGGCAGTGACTTGTACCATTTGTGGAGAGACTCTGAGCAGCTACCACAAGCTCCGACCGCACATGCAGAACGTCCACGCCAAAAAATACAAATGTATAGCGTGCCCTGAGTTGTTTGAGACACATTATAAAAGATCGTTGCATATGATGACTGTACACAAAAGCAGAGAGGAAATAAAATGCCAATATTGCCCTAAGACCTTTGTGTTCCGAAGTTCAATGATGGCACATTTGAGGGTGACGCACTTGCAAGAGAAAAACACGATTTGCGGGATTTGTGGGTGGAGGACGGTCAGCAAGAGCAAGCTGAAGAGGCACATGTCGAAACACAGCAACGAGAAGAACTACAAATGTGACATTTGTGGAAAAGCGTTTAAGGCGAAGAAGAACATGATTTTGCATCAGAGAAACGTGCATGAGAAAACATACACGGAGGAAATAGTCTTGAAAAGACAAAAGAAATTGGAACTGGCCCGCCTCTTGCGCACAATCATAACCAGTTCCACCCTACTGCCCTTCAGGTGGCACGCTTCCAAGTACATGTGCTTCTACTGTCCAGAACACTTCATCAATATATCTCAACTGAGAAATCATCTCGAGTCCCATCCCGACATCGATCTTAACGAGATCATTAGAAACAACTATTTGAAACAAAGGATTAAGATAGATGCTAACCTATTATGGTGCACGAAATGCCCAGCTGAAGTACTAACCTTCGCTGAGTATATTGAGCATCTGTTTGAAAGGCACGGGATGACATTTCTCAAAGAAGTCGTTGATCGATTCGAGGTCTTCCAATTAGATGACAATGAGATGAGCTGCTTAGAATGCGGAGCTATATTTGGACACTTTTCAAATCTTCTACAACACGTCCATCAGAATCACGTAAATGTTGAGAAGTACCATAAATACCTTTGCGAGATTTGCGGCCAAGCTTTCGCGGACAAAGGTGGCGTCACGACTCATATTAATCAGATTCATTGTTCTCAAAGACCACCTAACGCCGTCGACGTTTCTTCCGAAGAGGACACAAGAAGAGACGCTGTGAGGCTACTGGCTGTTATCATTGAGAACTCCACGATAAAGCCGTTCAGATGGTGCGAAAATAAGTTCATGTGTTTCTACTGCTGCTGCCTCTTCAACGAGGCTTCTCAACTCAGGACTCACAACAAAAGCGAACACGAGAACGCAAAGCTCAGCACGATTCTAAGCATGCGACTTCCTCACGCTTCTACAAACAGAATAAAGTGTGACGTCTCCGAAATATCTTGCAAGAGATGTCCGAAAACTTTGCGCAATTTAGAAGAGTTCCTAGACCATGCCGCCTCCTCGCATGATCTTCGATTTAATAAGCAAGCTAGCAATTTCCTCTTCACATTCAAATTGAAAGACGAAGAAATGAATTGTCTGGAATGTAATGAAAGCTTCAAGTTTTTTGGAACTCTTCTCACTCATGCACACAAATATCATAATAAAGGCAACACGTTTCTGTGTGAAGTTTGCGGGCAAGGATTCATTTCGAAGAATCACGCAGACAGTCATCATCGCTATTATCATGCAGACGCGGAATGCAAAAAATGCTTAAAGAAATTCAAGACAAGATACCTCTTGACCAGACATAACAACGAGAAGCACAAAAGTTTCAAATGTCCGAAGTGCTCTTTAACCTTAGGCAGCAGGTACTTGAAAAAGCGACACCTGGCTCTAGCTCATGACGTTAAAAGTGATCAGTTTAAATGTGAAGATTGTGGGAAGATATTTGTTTTAAGAAATAAGTTGTTGGAGCACAAAGAGAGGGTGCATTTGAAGCTGAAGACGACGATTTGTCCTATTTGTGGGTTCAGAGTGTTCAACAAGGAGTTGTTGAAGAGGCACATGGTGAGGCATGACGACGCGAGGCCATTCGAATGTGATGTTTGCAAGAAGGCGTTTCAGCGGAAGAAGACTCTGGAGTACCACTGTCGAATCCACACGGATGACAGGCGGCATGCGTGCGCGGCTTGCGGTAAAGCGTTTGTTCAAGTTGCAAGTCTCAAACTACATATTCGCGTGCATCACTCTCAATAA
- Protein Sequence
- MRNNIVQVLSNSSVMPFRWLKSSYRCFYCYEVFQEPKDLKIHQEVHINDNSKLNCMDNYWDSTVHVDVSTLSCKLCPKLIDEFYDLIDHLITAHNISFNKDIGICMNPFKLNNISVQCALCGQHHRTFGHLLLHMNKEHKGYSQLLCDVCGRHCRNKSHLREHKKEHVSKAVTCTICGETLSSYHKLRPHMQNVHAKKYKCIACPELFETHYKRSLHMMTVHKSREEIKCQYCPKTFVFRSSMMAHLRVTHLQEKNTICGICGWRTVSKSKLKRHMSKHSNEKNYKCDICGKAFKAKKNMILHQRNVHEKTYTEEIVLKRQKKLELARLLRTIITSSTLLPFRWHASKYMCFYCPEHFINISQLRNHLESHPDIDLNEIIRNNYLKQRIKIDANLLWCTKCPAEVLTFAEYIEHLFERHGMTFLKEVVDRFEVFQLDDNEMSCLECGAIFGHFSNLLQHVHQNHVNVEKYHKYLCEICGQAFADKGGVTTHINQIHCSQRPPNAVDVSSEEDTRRDAVRLLAVIIENSTIKPFRWCENKFMCFYCCCLFNEASQLRTHNKSEHENAKLSTILSMRLPHASTNRIKCDVSEISCKRCPKTLRNLEEFLDHAASSHDLRFNKQASNFLFTFKLKDEEMNCLECNESFKFFGTLLTHAHKYHNKGNTFLCEVCGQGFISKNHADSHHRYYHADAECKKCLKKFKTRYLLTRHNNEKHKSFKCPKCSLTLGSRYLKKRHLALAHDVKSDQFKCEDCGKIFVLRNKLLEHKERVHLKLKTTICPICGFRVFNKELLKRHMVRHDDARPFECDVCKKAFQRKKTLEYHCRIHTDDRRHACAACGKAFVQVASLKLHIRVHHSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -