Uoli015574.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376367.1:718172-723130[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.4e-06 0.00084 20.4 0.4 2 23 87 109 86 109 0.94 2 14 0.001 0.1 13.9 3.0 2 23 117 139 116 139 0.94 3 14 8e-05 0.008 17.3 3.3 2 23 147 169 146 169 0.92 4 14 9.5e-05 0.0094 17.1 0.8 2 23 177 199 176 199 0.96 5 14 3.6e-05 0.0036 18.4 0.2 3 23 207 228 205 228 0.94 6 14 0.00063 0.063 14.5 0.1 1 23 235 258 235 258 0.94 7 14 2.8e-05 0.0028 18.8 0.5 3 23 265 286 263 286 0.96 8 14 1.6e-05 0.0016 19.6 1.0 2 23 302 324 301 324 0.95 9 14 1.4e-06 0.00014 22.9 3.5 1 23 332 355 332 355 0.97 10 14 1.4e-06 0.00014 22.8 0.6 2 23 361 383 361 383 0.97 11 14 0.045 4.5 8.7 4.5 2 23 391 413 390 413 0.93 12 14 2.5e-05 0.0025 18.9 1.7 1 23 419 441 419 441 0.98 13 14 0.052 5.1 8.5 1.1 1 23 446 469 446 469 0.93 14 14 0.0028 0.28 12.5 0.1 3 20 487 504 486 506 0.93
Sequence Information
- Coding Sequence
- ATGGAAGTTGAAACAGAACAAATATTTATAAAACCAGAGCTCAATGTAGAAGTAGAAATCCAACCGTACAACATTCCTTTAGAAAATGAATCTATAAAAACTGTAAACATCGAAGATACTTCCTTACCTGCTATAAAATCTGAAGAAACTGATCAACACCTTGAGAAAATCATAGCAAATAACGAATCGTCAACAGTCTCGAAAAAGAAGATCGAAATCGAAGGAAAAGTGTATGAAAATGGCAAAATCAACAGACTACAATGTCCTGAATGCGAGAATACGTTCAAAAACCGCGCAAACTTGCGAGCTCATTTGAAATTCGTGCATTCCACTGAAGAAGACGTTGTGGAGTGTGATCAGTGTTTCCGAACGTTCAAAACTTTGCAGCACCTTCGTTCCCATAAGAGTTCTGTGCACGTGGATGGGAGCATGGACATTCCTTGTGACCACTGCGACAAGAGCTTCCCGAATAAGAAGAAGCTGGCTAATCACATATTCTACTGTCACCCCGAGCCCGAGCAAGATGTCCAGTGTGAAGTCTGTTCTAAGATTTTTCAGACTAAATACAGGTTGAAAATCCATATGAAGCAAGTCCACCCTTCCGGCCAGAGCGTGAACTGCCCCACCTGCGAGAAGCAGTTCAAGAATCCGATGCTGCTGCAGCGGCACGTCAAGTGGGCGCACCCGCCCGACGGCCTGATGTACCGGTGCCAGGAATGCGGGAGAATGCTCCCCTCTATCGACGGATACAAGCGCCACATGGCGGCCGTTCACGGCACCAGAGACATCGCCTGCAACATCTGCTCGAAACTCTTCAAAACTAACGCTAGCCTCAACCGACACACATCCACAGTTCATGCCGAAGTTAAAGCAGAAAGAAAAAAATACAAACCCGGTGATATACCCTGCCCCGAGTGTGATAAAAAGTTCAGCACTAATACTGGCCTACACTGGCATCGAGAGAAGTTCCACCAGGATAATAACAAAATAGACTACGCATGCCAAATGTGCGGGAAGGAATTCTGCGACCATAACAATTTGAAAAGACACATGGATACTGTCCATTCCGTTCAAAGCGCCAAATGTGATATTTGCTTCAAAGTGTACAAATCTCCTATGAATCTGCAGAGGCATATTCGAATTACCCACGCTCCGCCTGAAGCGGCCAAATCTTGTGATATATGCCAGAAAACTTTCAAATGTTCCATGCATTTGAAGATTCATAACAACGTCGTTCATTCCAAGGAAGGTGATTTTTCTTGCGGCGTCTGCCAAAAAGTCTTCTCTTCAAAAAAGTATATGGTTAAACACGAAAAAACGCATAACAACAGACAATTCCCTTGCATTATGTGTTCGAAGCTATTTAAATCTATGAATGACGTTAAAAGACATACAAGACGTGTTCATTTGAAGAAAGATATCGACTTTGGAGAAAATACTTTTGATAGTCAAGAATATTGTGTCAAATGTGGTCTTTCATTTGAAGATAACGAAGAGTTACATGAACATATTATTAACTGTGGGAATATTAATCAAACTGAAACATTTCAAATAAAATTAGAAATGGAAGACCCAAGTGAAGACACGATTTTGTCATGA
- Protein Sequence
- MEVETEQIFIKPELNVEVEIQPYNIPLENESIKTVNIEDTSLPAIKSEETDQHLEKIIANNESSTVSKKKIEIEGKVYENGKINRLQCPECENTFKNRANLRAHLKFVHSTEEDVVECDQCFRTFKTLQHLRSHKSSVHVDGSMDIPCDHCDKSFPNKKKLANHIFYCHPEPEQDVQCEVCSKIFQTKYRLKIHMKQVHPSGQSVNCPTCEKQFKNPMLLQRHVKWAHPPDGLMYRCQECGRMLPSIDGYKRHMAAVHGTRDIACNICSKLFKTNASLNRHTSTVHAEVKAERKKYKPGDIPCPECDKKFSTNTGLHWHREKFHQDNNKIDYACQMCGKEFCDHNNLKRHMDTVHSVQSAKCDICFKVYKSPMNLQRHIRITHAPPEAAKSCDICQKTFKCSMHLKIHNNVVHSKEGDFSCGVCQKVFSSKKYMVKHEKTHNNRQFPCIMCSKLFKSMNDVKRHTRRVHLKKDIDFGENTFDSQEYCVKCGLSFEDNEELHEHIINCGNINQTETFQIKLEMEDPSEDTILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01503185;
- 90% Identity
- -
- 80% Identity
- -