Uoli009917.1
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- -
- Assembly
- GCA_947369235.1
- Location
- OX376368.1:7495869-7501244[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.013 1.3 10.4 0.3 2 23 20 42 19 42 0.95 2 22 0.00024 0.024 15.9 0.9 3 23 49 69 47 70 0.94 3 22 0.0036 0.36 12.1 1.0 1 23 75 98 75 98 0.98 4 22 0.024 2.4 9.5 0.6 2 23 101 123 101 123 0.94 5 22 0.0024 0.24 12.7 1.7 1 23 204 227 204 227 0.95 6 22 3.9 3.9e+02 2.6 0.0 2 23 255 277 254 277 0.93 7 22 1.2 1.2e+02 4.3 0.1 2 23 300 323 299 323 0.92 8 22 4.8e-05 0.0048 18.0 0.1 3 23 330 351 329 351 0.94 9 22 0.042 4.2 8.8 5.6 2 23 356 378 355 378 0.94 10 22 0.002 0.19 13.0 3.6 1 23 383 406 383 406 0.97 11 22 0.00014 0.014 16.6 6.5 1 23 410 433 410 433 0.97 12 22 0.0045 0.45 11.8 0.3 2 23 440 461 439 461 0.96 13 22 0.0074 0.73 11.2 0.2 1 23 508 531 508 531 0.96 14 22 0.0078 0.78 11.1 0.0 3 23 563 584 561 584 0.95 15 22 0.0041 0.41 12.0 0.5 2 23 607 629 607 629 0.96 16 22 0.0026 0.26 12.6 1.5 1 23 634 657 634 657 0.95 17 22 0.33 33 6.0 0.3 1 23 662 685 662 685 0.90 18 22 0.00071 0.071 14.4 1.4 1 23 690 713 690 713 0.93 19 22 9.3e-05 0.0093 17.1 0.6 1 23 720 743 720 743 0.98 20 22 0.0038 0.38 12.1 0.5 1 23 749 771 749 771 0.97 21 22 6.9e-06 0.00068 20.7 0.3 1 23 777 799 777 799 0.93 22 22 2.8e-05 0.0027 18.8 6.2 1 23 805 827 805 827 0.99
Sequence Information
- Coding Sequence
- ATGAAGTACGATAAAGTCGTTGAGGTGCAAATTCAAGCGTACAGGCTTGCTGACATGAGGTGCCTGTTCTGCGAAGAACAATTCAGTTACTTTGGCAACTTAATCAGTCACGTGAATGTCACACATCCGCAAAACAGCATAATTTGCAGCGACTGCGGAGTTTCGTTCAATAAGAGGCGCGATCTTGCGGTTCACTTTCGATACCATCATCGCCAAGGCGGATACTCTTGTGATCAATGTGCTCAGATCTTCGACAACTTCTACACGCTACGTTCACATAAAAACACAGCACACTTCAGAAAATGCTCCAGTTGTAGCCAACGTTTTGGCACGATGACGTTATTGCAGAAACATATCGCGTTAGAACATCCCGATAATGGTAGTTTAATCTGCGAGTACTGCGCCAAACTGTGCCACTCGCTTCAAGGGTTGAGACAGCACGCGAGCAAGTGTCGGGTTAAAATGATCTGCACAAATGACGACGCTGATCCATCTATTCCCGTCTACAACGTGCAGCCAAGGAAGAAGCAAAATATAAAGCAGATTAGGGAAAACATTCAATGCGTACTAAATATGTCTACAGCAATACCTTTTAAGTTCTTTTCCAAATTTTCATGCTTTTACTGTTCCAAGAAGTTCGTGGAATTTGAAGATCTCAAACAGCATACTGAATCAGAGCACCCCGTTTGCGACCTTAAGTCGACATACATGAGGAAATGTAAAGGCGAACGCATTAACGTCAAAATTGATATATCTTTATTGACTTGCAAAATTTGTCTCGTACCTATAGACGATTTCAATACTCTTATCGATCATTTAATAACGGAACACACAGCAGGCTACGATAAATCTGCCACTAAATGTTTAGAGCCGTACAAAATCATAAAAGACAACATGCCATGTCCCCTATGTCCGGAGCGCACATTTAGGTATTTCGGAATCTTGTTGCGGCATATAAATTCGGAACACAGTAATAATAACAAAATCTGCGATTTCTGTGGCCGCACGTTCAAGAACGTTGCCAATTTGAACGTCCACATCTCTTACGCGCACACCGGCACGTGCTCGTGCGATGTTTGCGGGATTAAATGCAAGAACCAGTGGTGTCTTGCAAGGCATAGGGCTAAGAGCCACAACGCGAAAGAGTACAAATGCCCAAAATGTTCTGAGCAGTTTCAGTCCCAATACCACAAGCAGAAACATCTGATCAAAGCGCATGACGTTGGCCACAAGTGTCTGCATTGCGGGAAGATGTTCACCAGAAACTCCTTCATGAAGGACCATGTGAGGAGAACACACCTGAAGGAAAAAAATGTTCCTTGCACTCTTTGCGCTGAAAAATTTTTTGATAACTATCTTCTGAAGATGCATATGGTGAAACATGAGGGTGCTAAGAACGTAAGTCTGGAGGACAAATGTAAGAAACTGGAACTGGCGCGTAAACTACTCGTTAAGAGGAGGAATGTTGAATACGTGTTGCAGTATGGCACTGTCACGCCCTTTCTGTGGTATAAAAGCAAGTATAGGTGCTTCTACTGTACGGAGCCCATGAAAGACCCTTCCACGCTCCGGGACCACACTCTCATTGCACACAAAAATGTTGACTTTGAAGCTATTGTACAATACAGGACTAAACACAATAGAAACAAAGACGCAGCAGTCAAAATCGACGTCACTGACATAGCTTGTAAACTGTGCGATAGAGCTGTAGCCAACTTAGAGGAACTAATACATCATTTGATTATAGCCCATGACGCACAGTACGATGTTGGCGTACCGAATTGCTTACTGCCGTTCAAGCTAGATAAAGATCAACCCACATGCCCAACTTGCGATATGAAGTTTGTCTTCTTCGAATATTTGCTCAGACATGCCAACAAACTCCACCTGGCACACGATTATATTTGCGACGTATGTGGTACGAGTTTTCAAGGTGAAAACCATTTGAAAATGCATAATAGGTACTACCATCGTCTGGGAGGGTACACTTGCGATCAATGCGGCATAAGTCTTCAAACTTTGTCTAAAAAGATTCTTCACGAAAAGAATGTTCATCAAGTAAATCTGTACACGTGTCCTCATTGTCCGGAGACTTTTAAAAGCCCGTATTTTAAAAAGCTGCATTTGGCCAACGTTCACGGAGTTGAAGAGTTAAAATTTAAATGCCCTTACTGCTCAAAGGTTTATCCACAAGAGAGCATAATGTCTCGTCATATGAGGAGAGTACACCTAAGAGAGAAAAATTTCGAATGTGAAGTCTGTGGCGACAAATTCTTCAGTCCTTATGACGTGAAGCTTCATATGTTCAAGCACAACGGGGTGAAGAAATTTGTATGCTCTATTTGCGGCAAGAAATTTGCTAAGAAAGGCAATTTGAATTCTCATTCAGTGATTCATTCTGGTGAGAAGAAATACGTTTGTGAGCATTGTGATAAGCCATTCGCTCATCACACTAATTATAAGGTTCATTTGAGGAAACATGTGAAAGTTGATCAAGTTGGTACTGCCCCTGAAGAAGACCACGAAATTATTAAATTGGAATTCATTGAGGATTTTGGCGTTAAATGA
- Protein Sequence
- MKYDKVVEVQIQAYRLADMRCLFCEEQFSYFGNLISHVNVTHPQNSIICSDCGVSFNKRRDLAVHFRYHHRQGGYSCDQCAQIFDNFYTLRSHKNTAHFRKCSSCSQRFGTMTLLQKHIALEHPDNGSLICEYCAKLCHSLQGLRQHASKCRVKMICTNDDADPSIPVYNVQPRKKQNIKQIRENIQCVLNMSTAIPFKFFSKFSCFYCSKKFVEFEDLKQHTESEHPVCDLKSTYMRKCKGERINVKIDISLLTCKICLVPIDDFNTLIDHLITEHTAGYDKSATKCLEPYKIIKDNMPCPLCPERTFRYFGILLRHINSEHSNNNKICDFCGRTFKNVANLNVHISYAHTGTCSCDVCGIKCKNQWCLARHRAKSHNAKEYKCPKCSEQFQSQYHKQKHLIKAHDVGHKCLHCGKMFTRNSFMKDHVRRTHLKEKNVPCTLCAEKFFDNYLLKMHMVKHEGAKNVSLEDKCKKLELARKLLVKRRNVEYVLQYGTVTPFLWYKSKYRCFYCTEPMKDPSTLRDHTLIAHKNVDFEAIVQYRTKHNRNKDAAVKIDVTDIACKLCDRAVANLEELIHHLIIAHDAQYDVGVPNCLLPFKLDKDQPTCPTCDMKFVFFEYLLRHANKLHLAHDYICDVCGTSFQGENHLKMHNRYYHRLGGYTCDQCGISLQTLSKKILHEKNVHQVNLYTCPHCPETFKSPYFKKLHLANVHGVEELKFKCPYCSKVYPQESIMSRHMRRVHLREKNFECEVCGDKFFSPYDVKLHMFKHNGVKKFVCSICGKKFAKKGNLNSHSVIHSGEKKYVCEHCDKPFAHHTNYKVHLRKHVKVDQVGTAPEEDHEIIKLEFIEDFGVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -