Uoli005939.3
Basic Information
- Insect
- Udea olivalis
- Gene Symbol
- clz9
- Assembly
- GCA_947369235.1
- Location
- OX376340.1:22565429-22567634[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-09 2.5e-06 27.9 0.0 2 38 17 53 16 58 0.91
Sequence Information
- Coding Sequence
- atgccgcgagaatatgtaaaaaaagggacaagatcgggagatgtaaatgaagacgcaatgaagtcagcgatagaagaagtttttaataaaacattgtctattagaaaaTCTGCGCAAAAATATGGCGTCAAACCAACAACGCTTGAAAGTCGCTTGGCAAGGTTTCATAAGCAGGCGGCTGTTGAAGAAGAAGATAATACGGTACGTGTTTTCAGTTCCAAGTACTCTTCAAACCAAGTGTTTACAGCCGAAGAAGAGACTCATCTTAATACGTACATAATGAACTGCTCCAAATTGCATTATGGAATGACGATCGTTCAAGTCAGGAAACTGGCGTACGAGTTTGCAAAAGCCAAGCAACTACGTTATCCTCATAATTGGGATCATAATAAAATGGCAGGAAAGGATTGGGTAGACAGTTTTCGCAGACGATGTACAAATTTAAGTCTTAGGAAACCAGAAAACACCAGTGCGGCCAGATGTTTCGCTTTCAACAAGACTGCCGTAAATGATTTCTTCGGAAACCTTGAAAAAGTATATACAAAGTATAAGTTTACTGCTGACCGGATTTACAATTTTGACGAGTCAGGGATATCCACTGTGTTGAATACCCCTAGGGTTTTAGCTGAAAAGAACCAGAAACAAATAGGGCAACTTGTATCGGCAGAGAAGGGAGAACTCGTTACATTCGGAGGAATAATTTCAGCTAGTGGTAATACAATTCCCCCTCTATTTATCTTCCCCAGGGTTCATTTTAAGGACCATTTCATGACTGGTGCTCCGGAAGGTAGCCTAGGGATTGCTACAAAGAGTGGTTGGATAAATTCTAGTATATTTTTAGAGGTTCTCAAACATATCCAGAAGAAATCGTTATGCTCCAAAGATAACCCTATTTTGCTGCTGGTTGATAACCATGAAAGCCACGTCACAATAGAAGCTGTAGACTATGCTCGTGATAATGGCATTGTTTACCTGTCGTTTCCACCTCACACAACACACCGTCTCCAACCTTTAGACGTTGGAATATTTGGGCCTTTTAAGGCCAAATTGAAGACAGCGTTCAATGATTGGCATGTGAATAACCCAGGCAAAACCCTAAACATATACAATTTACTGCAACTTGCCAAACTGGCATATTTTGAATCATTCAATGGGAAAAATATAACAAGTGCCTTTCAGAAGACTGAAATTTGGCCATTTAATAAGCTAGCCTTCGGTGACGATGACTTTGCAGCTGTCAGCGTATACCATTCGGGTTCTACATCAGGTGCAGATGTTAGCGTCGTACAAACTAATACTGAAGACGTAGAACAACAAGATCTACCTCCCGAATTAGCTCATACATCAACTTCTTTACCGCCACTGCCATTAGAACCCGCACAAGGTGGCCAATCAAGTTCTACGGCTGATCAAGACCAAGGTCTCCCACGGAGCTCAGTGCCTGTATCAGCTTCTTTGCCTACATCTACAACTCCGCCTGCGACTTTGCCAACTATAGGATTAATAACTCCAGAAGTAATCCGGCCCTACCCCAAAGTGGACAGAAACGCGTCGAAAAAGTCGAATAAAGGAAGACAGCCAGGAAAATCGAGAATATATACAGAAACTCCGGAAAAAACAAGGCTAGAAGAAATAGAGaaagcaaaacagttcaaaaagcaagaactagaaaagaaacaaaaggccaaggagatgaaacAAGGATTATTTTCTCTATCAACCAAACAAAAAAGACTGAAGAAAACTGTAAATACAACTAAATCAAAGAGGCAAAAGAAAACTGTGCTTAAAAAATACAGTCCCACTGAATACAAGGTTTCATTTTTGAGGAAGAAGCCTGGTACTTCGAAATTTGTTTTTCCCACCACCAAAGATGAGGGCACAGTTTACATATCAGATGTAGTACACACACTGTCGCCATCAAAATCTGCTTCAACAGCGAGAacagcccacatctttagtttcggaaaagacttatctaaatatgatgttggATAA
- Protein Sequence
- MPREYVKKGTRSGDVNEDAMKSAIEEVFNKTLSIRKSAQKYGVKPTTLESRLARFHKQAAVEEEDNTVRVFSSKYSSNQVFTAEEETHLNTYIMNCSKLHYGMTIVQVRKLAYEFAKAKQLRYPHNWDHNKMAGKDWVDSFRRRCTNLSLRKPENTSAARCFAFNKTAVNDFFGNLEKVYTKYKFTADRIYNFDESGISTVLNTPRVLAEKNQKQIGQLVSAEKGELVTFGGIISASGNTIPPLFIFPRVHFKDHFMTGAPEGSLGIATKSGWINSSIFLEVLKHIQKKSLCSKDNPILLLVDNHESHVTIEAVDYARDNGIVYLSFPPHTTHRLQPLDVGIFGPFKAKLKTAFNDWHVNNPGKTLNIYNLLQLAKLAYFESFNGKNITSAFQKTEIWPFNKLAFGDDDFAAVSVYHSGSTSGADVSVVQTNTEDVEQQDLPPELAHTSTSLPPLPLEPAQGGQSSSTADQDQGLPRSSVPVSASLPTSTTPPATLPTIGLITPEVIRPYPKVDRNASKKSNKGRQPGKSRIYTETPEKTRLEEIEKAKQFKKQELEKKQKAKEMKQGLFSLSTKQKRLKKTVNTTKSKRQKKTVLKKYSPTEYKVSFLRKKPGTSKFVFPTTKDEGTVYISDVVHTLSPSKSASTARTAHIFSFGKDLSKYDVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01134726;
- 90% Identity
- iTF_01503794;
- 80% Identity
- -